Query= MSMg01no479_n05.b1 MSMg01no479_n05.b1 CHROMAT_FILE:
MSMg01no479_n05.b1 PHD_FILE: MSMg01no479_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:57 2005
(249 letters)
>mm_chr2_18105488_18106137
Length = 650
Score = 429 bits (222), Expect = e-125
Identities = 239/250 (95%), Gaps = 10/250 (4%)
Strand = Plus / Minus
Query: 1 cactatgtgtcactctatagacagaatggcttcaaactcagagattcacctgccttccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 cactatgtgtcactctatagacagaatggcttcaaactcagagattcacctgccttccct 513
Query: 61 ccagggtgctggaattaaaggcttgcaccactgctgcccagcaacaacaacaacaacaac 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 512 ccagggtgctggaattaaaggcttgcaccactgctgcccag---------caacaacaac 462
Query: 121 aacaacaacaaaattgcagccattaaa-gggggggggggtgaagaatgtagaaaaattga 179
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 461 aacaacaacaaaattgcagccattaaaggggggggggggtgaagaatgtagaaaaactga 402
Query: 180 cataactaggtatcataatactaaatgaaataagctaaactcagaaatactgcacatttc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 cataactaggtatcataatactaaatgaaataagctaaactcagaaatactgcacatttc 342
Query: 240 ctcttatggg 249
||||||||||
Sbjct: 341 ctcttatggg 332
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 650
Length adjustment: 9
Effective length of query: 240
Effective length of database: 641
Effective search space: 153840
Effective search space used: 153840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no479_n05.g1 MSMg01no479_n05.g1 CHROMAT_FILE:
MSMg01no479_n05.g1 PHD_FILE: MSMg01no479_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:57 2005
(565 letters)
>mm_chr2_17956206_17957170
Length = 965
Score = 1042 bits (539), Expect = 0.0
Identities = 563/581 (96%), Gaps = 16/581 (2%)
Strand = Plus / Plus
Query: 1 tctccctcttgccctcaactcagcctggctcctaccctcccactcccatctgtccgaggc 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctccctcttgccctcacctcagcctggctcctaccctcccactcccatctgtccgaggc 260
Query: 61 cctctgtttatctgtccacataacgtctttaattcgaagcccacccagacaacttcagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctctgtttatctgtccacataacgtctttaattcgaagcccacccagacaacttcagca 320
Query: 121 tgtttattctgttttcttctagtatggacaattctgaaagctctgggcaacagcacactt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtttattctgttttcttctagtatggacaattctgaaagctctgggcaacagcacactt 380
Query: 181 aagggaaaatgaggagcttagtagattggagaaaattaacctgccacaaacaacctcatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagggaaaatgaggagcttagtagattggagaaaattaacctgccacaaacaacctcatt 440
Query: 241 aaagaactgcctaccaagagttaagaattaatagcaaaatggatgggaaaaaaaacccct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagaactgcctaccaagagttaagaattaatagcaaaatggatgggaaaaaaaacccct 500
Query: 301 tgagtgaagagaccttcaaccccctttcctgaaaggtgcataatttacagaccaaaccta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagtgaagagaccttcaaccccctttcctgaaaggtgcataatttacagaccaaaccta 560
Query: 361 acattgagttttatttcccgttcctagtgacctgtcccataaccctgtaatccactgtgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acattgagttttatttcccgttcctagtgacctgtcccataaccctgtaatccactgtgg 620
Query: 421 gggtgttttccctttggtgcctttgggcttttttttttttt----------------aat 464
||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 gggtgttttccctttggtgcctttgggctttttttttttttttttttttttttttttaat 680
Query: 465 gaaaccataggttctcagatccaaatgctttctaatatgtacatgtatatatgatatatg 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaaaccataggttctcagatccaaatgctttctaatatgtacatgtatatatgatatatg 740
Query: 525 gatatataattccattcacatacaaatatatgtatttggtc 565
||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tatatataattccattcacatacaaatatatgtatttggtc 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
