BAC Information

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BAC

Clone NameMSMg01-480A17
Chromosome2 (Build37)
Map Location 70,187,395 - 70,188,006
singlet/doubletsinglet
Overlap geneMyo3b
Upstream geneDhrs9, Lrp2, Bbs5, Kbtbd10, Fastkd1, Ppig, 4930578N16Rik, Phospho2, LOC433432, Klhl23, Ssb, Mettl5, 4930550G17Rik, Zfp650
Downstream geneLOC100040021, Sp5, 4933404M02Rik, LOC100040068, Gad1, LOC100039766, Gorasp2, Tlk1, Mettl8, 4833418A01Rik, Cybrd1, Dync1i2, Slc25a12, LOC667528
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480A17.T7 (MSMg01no480_a17.b1)MSMg01-480A17.TJ (MSMg01no480_a17.g1)
ACCAG560779AG560780
length716716
length of high quality
(start - end)
621 (69 - 689)586 (80 - 665)
definitionCHROMAT_FILE: MSMg01no480_a17.b1 PHD_FILE: MSMg01no480_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:14 2005CHROMAT_FILE: MSMg01no480_a17.g1 PHD_FILE: MSMg01no480_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGA
ATCAGCATTTGCATGAAGGCGTCTCTCTGTGACTTGGAGCCCACAGCAGG
CTTTGAAGTCTGATCCAATTTTTGCTGCCTCCTATTTGATGTTGAAAGGG
TGAAATGAAGAAAATGTACAGTTTTTGCCAGTAACTCTGCTGAGCATATG
TAAGATTTAAAAAAAAATCCTTTGGACGATGTGCTTAGAAATGGCAGATT
AATACCTTCCGATAGGTTTTCTTTGTTTCTCTCTTAAGGATAAAAATTAA
GTAAAGATGATATATTTTCACATGCCTGGTTTTTTTTTTTTGTTTTGTTT
TTTGTTTTTTGTTTTTGTTTTTGTTTGTTTGTTTGTTTGTTTCTGCCCCG
CTTTGTGAGTGAATGAAAAAGGGATTGGGTGCAAATGTGTGGGGCAAAAT
GTACTGCAGCTTGGCTCCTAACTGCCCCAGGAGAGGACTGTCACTCAGTT
CTATACAAGACCTAGGAAGCATACAAGTATTGCCAATGCAGTCAGGGGCA
AAGGTCCCTTAGTTTAATGGAAAGCCTGTTCTTAAGGCTACTTCATCAGA
GGGTAAAATGGCCTTTCTCTCACTGGATCTTTTGGCAGCTCTCAGTTGCT
GGAACCGATGTGTCACCTTCTCTGGTGTACCACACTGCCTCAGCTCACCA
AAGACCGAGCCCTTGT
TGACGATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTACAAAAAATTGAGAGATTTGCCTATCTCTGTCTC
CCAAGTGCTGGGATTAAAGGTGTGTGCCACCAATGCCTGGCTACACGGAT
TTATTTTTTAGGTATTATATTTATATGATATATAAAGTTTGCAGCAAAAG
TGAGGAGAGGGGACCCTCTAGAATGTACCAGAGACCTGGGAGATGAGAGA
CTCTCATGACACAAAGGGAGGGAGCTTAGATGAAATGCCCAACATTGGGG
AGAGAGTACTTATATGGAGTCCATANCTGGAGTAAGACAGGGCATCGAGT
AAGGGGTGGGGTTGCCATCCTACAGTCAAAAACTCTGACCCAGAATTGTT
CCCGTCTAAAAGAACTGCAGGAACAAAAATGGAGAAGAGACTGAGAGAAA
GCAGGTCCAACTTGGGATCCATCTCAAGGGGAGGCTCCAAGACCTGACAC
TATTACTGATGATAAGGTGTGCTTATAGAGTGCTCGGAGTGCAACCATGT
TATGGAGCCTAACATGGCTGCACTCTGAGAGGCCCAAAAAGCAGCTGACT
GAGACAGATTCAGATACTTACACCCAATCAATGGACTGAAGTCTGGGACC
CCTGTGGTTGAATTAGGAAAGGCTGAGGAGGGCAACCCCATAGGAAGACC
AGCAGTTTCAACTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_a17.b1 MSMg01no480_a17.b1 CHROMAT_FILE:
MSMg01no480_a17.b1 PHD_FILE: MSMg01no480_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:14 2005
         (621 letters)



>mm_chr2_70187195_70188215
          Length = 1021

 Score = 1087 bits (562), Expect = 0.0
 Identities = 605/622 (97%), Gaps = 11/622 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcgtctctctgtgacttggagcccacagcaggctttgaagtctgatccaatttttgctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcgtctctctgtgacttggagcccacagcaggctttgaagtctgatccaatttttgctgc 260

                                                                       
Query: 61  ctcctatttgatgttgaaagggtgaaatgaagaaaatgtacagtttttgccagtaactct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcctatttgatgttgaaagggtgaaatgaagaaaatgtacagtttttgccagtaactct 320

                                                                       
Query: 121 gctgagcatatgtaagattt-aaaaaaaaatcctttggacgatgtgcttagaaatggcag 179
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgagcatatgtaagatttaaaaaaaaaatcctttggacgatgtgcttagaaatggcag 380

                                                                       
Query: 180 attaataccttccgataggttttctttgtttctctcttaaggataaaaattaagtaaaga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attaataccttccgataggttttctttgtttctctcttaaggataaaaattaagtaaaga 440

                                                                       
Query: 240 tgatatattttcacatgcctggttttttttttttgttttgttttttgttttttgtttttg 299
           ||| | |||  ||||||||| |||||||||||   |||| ||||| ||||||||  ||||
Sbjct: 441 tgaga-attagcacatgcct-gtttttttttt---tttt-tttttggttttttg--tttg 492

                                                                       
Query: 300 tttttgtttgtttgtttgtttgtttctgccccgctttgtgagtgaatgaaaaagggattg 359
             ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 493 --tttgtttgtttgtttgtttttttctgccccgctttgtgagtgaatgaagaagggattg 550

                                                                       
Query: 360 ggtgcaaatgtgtggggcaaaatgtactgcagcttggctcctaactgccccaggagagga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ggtgcaaatgtgtggggcaaaatgtactgcagcttggctcctaactgccccaggagagga 610

                                                                       
Query: 420 ctgtcactcagttctatacaagacctaggaagcatacaagtattgccaatgcagtcaggg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ctgtcactcagttctatacaagacctaggaagcatacaagtattgccaatgcagtcaggg 670

                                                                       
Query: 480 gcaaaggtcccttagtttaatggaaagcctgttcttaaggctacttcatcagagggtaaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gcaaaggtcccttagtttaatggaaagcctgttcttaaggctacttcatcagagggtaaa 730

                                                                       
Query: 540 atggcctttctctcactggatcttttggcagctctcagttgctggaaccgatgtgtcacc 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 atggcctttctctcactggatcttttggcagctctcagttgctggaaccgatgtgtcacc 790

                                 
Query: 600 ttctctggtgtaccacactgcc 621
           ||||||||||||||||||||||
Sbjct: 791 ttctctggtgtaccacactgcc 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)