BAC Information

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BAC

Clone NameMSMg01-480E14
Chromosome2 (Build37)
Map Location 90,827,980 - 90,992,055
singlet/doubletdoublet
Overlap geneCugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd
Upstream geneOlfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1
Downstream geneNr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480E14.T7 (MSMg01no480_e14.b1)MSMg01-480E14.TJ (MSMg01no480_e14.g1)
ACCAG560964AG560965
length723721
length of high quality
(start - end)		648 (72 - 719)243 (75 - 317)
definitionCHROMAT_FILE: MSMg01no480_e14.b1 PHD_FILE: MSMg01no480_e14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:32 2005CHROMAT_FILE: MSMg01no480_e14.g1 PHD_FILE: MSMg01no480_e14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,827,980 - 90,828,627)(90,991,813 - 90,992,055)
sequence
ACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCG
GAATTCCAGTCCTTTCTAAGTATTTTTGTTGTCCTATTTTTATCATAAGC
AGAGGGAACTGGGCTGTTATTATTATTTGGTGAAACCGGTCCCTTAAAAG
AAACTTCTTTAGAAAGTCTACATTTGATTTTAATTACATAGTCTAATTCT
TATAACTGCTAATTGCTTCCAGGATGAAACTAAGTTCTTTGCATGAGGGT
ACACTTGATATATGACTAGCAACATTAGTTCAAGTGTACTGGCTCCCATC
TCTTAAAACTGTAGTGTTTATCCATACAACAGATTCCAAGGTGTTTTTTA
AACTGGCTTTACTGCTTTGAGTGGGTATGCAATAGTTAAATAATCCTTTG
GGAATTAAATATTTTGTTATTGTTTTTGTTTTTATTTACTTACTTTTTAT
TTTTTTTGAGACAGGGTCTTGTGTAACCCAGGCTGGTCTGGAACTCCCTC
TGTAGCCGAAGATGACCTTGAACTCCTGATCCTTCTGCTTCTACTTCCTG
GGTGCTGGGATTGCAGGCATGAGCCACAAAGCTCAGTTTGCCAGACATAG
AACCCAGGGCTTTTGTGTATATTAGGAAAACACTGTCATCCTCAGACCTG
ATTGCTATTTTTTGAGATAGTTTCCCTATATAGCTCGACTGGCCTCATGA
TCCTCTGTCACATCTGCTGAGGG

NGCGATGAAGTGGGAGGCCTGGGGGCCGCCTGGTGCAAACCTGGGGTGAA
CNATAGAAGTTTACACAAACTTCACTCTATAGACCAGGCTGACCTCAGAC
TCACAGAGATCTATCTGCCTCTGCTTTCTGAGTGCTGGGATTAAAGGTGT
GAGCCACCAAAGTCCAGCTAAGATGCCTTTTATTACTTTTTAATATTTGT
ACCAAAACTCAAAAGCAGTCTTGAATAGACGGTGGCACATTACTATCCTT
ACTCTGAACTATGCAGCCCCACCCTCACCTCCATGTATCCTGTTCTGTAA
AAGAGACAGTTTTGTAATCNTTTCATGGNGTCAAGCCTGGTCTACAGAGA
GAGTTTCAAGACAGCCAGGGCTCCAGGCCTGCAGAGAGAAAAAAAGACAG
TGTTTGGTAAGATAGCTCAGTAGGTAAAGGCACTGTTGCCAAACCTGACA
ACCTAAGTTTGATCCTTGGGACCCACGTGGTAGAAATAGAAAACTGATTC
CTGCAAGCTGTCCTCTACCTGCACATGAGCTTCATAGCACATGCCTGCCC
ACACACAGACACACTACCCACCCACCCACACTCACACTATGAATAAATGG
ATTAATAAGTAAATAATATATAATTTTAGGACTAAAGAGTTGGTTTTTTT
TTTTAAGAGCACTTGTCTCAGCCCCCATATGGTGGTTCACAACTATCTGT
ATCCAGGGGATCTAAATTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_e14.b1 MSMg01no480_e14.b1 CHROMAT_FILE:
MSMg01no480_e14.b1 PHD_FILE: MSMg01no480_e14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:32 2005
         (648 letters)



>mm_chr2_90827780_90828827
          Length = 1048

 Score = 1214 bits (628), Expect = 0.0
 Identities = 643/648 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttttgttgtcctatttttatcataagcagagggaactgggctgttattattatttggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttttgttgtcctatttttatcataagcagagggaactgggctgttattattatttggt 260

                                                                       
Query: 61  gaaaccggtcccttaaaagaaacttctttagaaagtctacatttgattttaattacatag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 gaaaccggtcccttaaaagaaacttctttagaaagtctacatttgattttaattacttag 320

                                                                       
Query: 121 tctaattcttataactgctaattgcttccaggatgaaactaagttctttgcatgagggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctaattcttataactgctaattgcttccaggatgaaactaagttctttgcatgagggta 380

                                                                       
Query: 181 cacttgatatatgactagcaacattagttcaagtgtactggctcccatctcttaaaactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacttgatatatgactagcaacattagttcaagtgtactggctcccatctcttaaaactg 440

                                                                       
Query: 241 tagtgtttatccatacaacagattccaaggtgttttttaaactggctttactgctttgag 300
           ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagtgtttagccatacgacagattccaaggtgttttttaaactggctttactgctttgag 500

                                                                       
Query: 301 tgggtatgcaatagttaaataatcctttgggaattaaatattttgttattgtttttgttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggtatgcaatagttaaataatcctttgggaattaaatattttgttattgtttttgttt 560

                                                                       
Query: 361 ttatttacttactttttattttttttgagacagggtcttgtgtaacccaggctggtctgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttatttacttactttttattttttttgagacagggtcttgtgtaacccaggctggtctgg 620

                                                                       
Query: 421 aactccctctgtagccgaagatgaccttgaactcctgatccttctgcttctacttcctgg 480
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 aactccctctatagccgaagatgaccttgaactcctgatccttctgcttctacttcttgg 680

                                                                       
Query: 481 gtgctgggattgcaggcatgagccacaaagctcagtttgccagacatagaacccagggct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgctgggattgcaggcatgagccacaaagctcagtttgccagacatagaacccagggct 740

                                                                       
Query: 541 tttgtgtatattaggaaaacactgtcatcctcagacctgattgctattttttgagatagt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttgtgtatattaggaaaacactgtcatcctcagacctgattgctattttttgagatagt 800

                                                           
Query: 601 ttccctatatagctcgactggcctcatgatcctctgtcacatctgctg 648
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttccctatatagctcgactggcctcatgatcctctgtcacatctgctg 848


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no480_e14.g1 MSMg01no480_e14.g1 CHROMAT_FILE:
MSMg01no480_e14.g1 PHD_FILE: MSMg01no480_e14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:32 2005
         (243 letters)



>mm_chr2_90991518_90992160
          Length = 643

 Score =  408 bits (211), Expect = e-118
 Identities = 235/243 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctatagaccaggctgacctcagactcacagagatctatctgcctctgctttctgagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ctctatagaccaggctgacctcagactcacagagatctatctgcctctgctttctgagtg 479

                                                                       
Query: 61  ctgggattaaaggtgtgagccaccaaagtccagctaagatgccttttattactttttaat 120
           ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 478 ctgggattaaaggtgtgagtcaccaaagtccagctaagatgccttctattactttttaat 419

                                                                       
Query: 121 atttgtaccaaaactcaaaagcagtcttgaatagacggtggcacattactatccttactc 180
           |||||||||||||||||||||||||||||||||||| |||||||||| ||||||| || |
Sbjct: 418 atttgtaccaaaactcaaaagcagtcttgaatagactgtggcacattgctatcctgacac 359

                                                                       
Query: 181 tgaactatgcagccccaccctcacctccatgtatcctgttctgtaaaagagacagttttg 240
           ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 358 tgaactatgtagccccaccctcacctccatgcatcctgttctgtaaaagagacagttttg 299

              
Query: 241 taa 243
           |||
Sbjct: 298 taa 296


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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