BAC Information

Click to search

BAC

Clone NameMSMg01-480G14
Chromosome2 (Build37)
Map Location 87,595,581 - 87,596,077
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141
Downstream geneOlfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480G14.T7 (MSMg01no480_g14.b1)MSMg01-480G14.TJ (MSMg01no480_g14.g1)
ACCAG561060AG561061
length709709
length of high quality
(start - end)		631 (73 - 703)493 (78 - 570)
definitionCHROMAT_FILE: MSMg01no480_g14.b1 PHD_FILE: MSMg01no480_g14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:42 2005CHROMAT_FILE: MSMg01no480_g14.g1 PHD_FILE: MSMg01no480_g14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAATTATXXXXXXXXXXXXXXXXXXXXXXXXXAAATACAAGAGGATGCG
CGGAATTCCTGATCTTTCCCAGACTTTTATCATGAATGGGTGTTGGATCT
TGTCGAATGCTTTTTCCACATCTAACGAGATGATTATGTGTTTTTTGTCT
TTGAATTTGCTTATATACTGGATTATTTTAATGGATTTCCTTATATTGAA
CCATCCCTGCATCCCTGGGATGAAACCTACTTGGTCACGATGGATGATTC
TTTTGATGTGTTCTTGGATTCGGTTAGCAAGAACTTTATTGAGGATTTTT
TGCATCAATATTCATAATTTTTATTGGTCTGAAGTTCTCTATCTTTGTTG
GGTCTTTTTGTGGTTTAGGTATCATAGTAATTGTGGCTTCATAGAATGAG
TTGGGTAGAGTACCTTCTGTTTCTATATTATAGAATAGTTTGTCAAGAAC
TGGGATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCAT
TTGGTCCTGGGCTGTTTTTGGTTCGGAGACTATTAATGACTGCTTCTATT
TCTTTTGGGGATATAGGGCTGTTTAGATCATTAACCTGATCTTGATTCAA
CTTTGGTACCTGGTATCTGTCTAGAAACTTGTCCATTTCATCCAGGTTCT
CCAGTTTTGTTGAGTATAGCCTTTTGTCGAANGATCTGATGGTGTTTTGG
ATTTCTTCA

CCCCGATGCAGTGGTAGGCCTGGCGGNCGCCTGTTTTCATACCGGGGGNG
AACNANAGAAGTAACACAAACATGAAAATGGGACTTATTACTTTCCCTTT
TTTCTTTTATTTTCTTTTCCTCTTTTTAAATTTGATTTCTGAGACAGTCT
TCTTAGTTTGTAATATGCAATAATGTTACTATATATATTTATCATTAATC
CATATTTTATTACTGTCCCCAGTCACCATGGCAATCAAAATTCTTACTTT
TTCTTTGTGGTCTTAGCTACTAAATTGACTGGACTTTCATTGTAACAGAG
ACTCAAATCCTACTTTCTTGTTTTTGAAATATGTTTTTATTAGTAAACAG
GTGTTTGAGTATTTAAATTTTCAAAAGTTGACATTAGTGAAGTGTATAAT
TTAAGGCAAGGTAAAGAGTTTGATTATATATTTTTACATATGTATATATA
AAGTAAGTAAAACATAACAAAATATGTTTAAGGATAATTATTACATTAAA
TAATGTGATCAGGAAACAGTTATCATAACAGAGTTTTCAACAAGTTATAA
CAATTGAGACAGAGTAAGACTTTATGGAATGAATGGAAGGAGTTAATAAT
TACAGAAGTTACCTTTTCATCTGAGTCACTCCTTATTGCCTATCTTCTCA
TAATTCATTACTTTTAAAATGAATCAGAGATGTTCAGAGATTATGTCCCT
GAATAGCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_g14.g1 MSMg01no480_g14.g1 CHROMAT_FILE:
MSMg01no480_g14.g1 PHD_FILE: MSMg01no480_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:42 2005
         (493 letters)



>mm_chr2_87595381_87596277
          Length = 897

 Score =  859 bits (444), Expect = 0.0
 Identities = 483/498 (96%), Gaps = 6/498 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggacttattactttcccttttttcttttattttcttttcctctttttaaatttgatt 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 atgggacttattactttcccttttttcttttattttcttttcctttttttaaatttgatt 260

                                                                       
Query: 61  tctgagacagtcttcttagtttgtaatatgcaataatgttactatatatatttatcatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgagacagtcttcttagtttgtaatatgcaataatgttactatatatatttatcatta 320

                                                                       
Query: 121 atccatattttattactgtccccagtcaccatggcaatcaaaattcttactttttctttg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 atccatattttattactgtccccagtcaccatggcaatcaaaattcttacttttactttg 380

                                                                       
Query: 181 tggtcttagctactaaattgactggactttcattgtaacagagactcaaatcctactttc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 381 tggtcttagctactaaattgactggactttcattgtaacagagactcaaatcctacat-c 439

                                                                       
Query: 241 tt-gtttttgaaatatgtttttattagtaaacaggtgtttgagtatttaaattttcaaaa 299
           |  |  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 440 taaggctttgaaatatgtttttattagtacacaggtgtttgagtatttaaattttcaaaa 499

                                                                       
Query: 300 gttgacattagtgaagtgtataatttaaggcaaggtaaagagtttgattatatattttta 359
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 500 gttgacattagtgaagtgtataatttaaggcaaggtaaagagttttattatatattttta 559

                                                                       
Query: 360 catatgtatatataaagtaagtaaa----acataacaaaatatgtttaaggataattatt 415
           |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||
Sbjct: 560 catatgtatatataaagtaagtaaataaaacataacaaaatatgtttaaggataattatt 619

                                                                       
Query: 416 acattaaataatgtgatcaggaaacagttatcataacagagttttcaacaagttataaca 475
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 acattaaataatgtggtcaggaaacagttatcataacagagttttcaacaagttataaca 679

                             
Query: 476 attgagacagagtaagac 493
           ||||||||||||||||||
Sbjct: 680 attgagacagagtaagac 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 897
Length adjustment: 10
Effective length of query: 483
Effective length of database: 887
Effective search space:   428421
Effective search space used:   428421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |