Query= MSMg01no480_m07.b1 MSMg01no480_m07.b1 CHROMAT_FILE:
MSMg01no480_m07.b1 PHD_FILE: MSMg01no480_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:10 2005
(200 letters)
>mm_chr2_168403349_168403948
Length = 600
Score = 354 bits (183), Expect = e-102
Identities = 195/199 (97%)
Strand = Plus / Minus
Query: 1 tttctgtaaaattccttcctcttttaaggaacgcgtttgatgaggctgaggctagcgcgt 60
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 399 tttctgtaaaattccttcctcttttaaggaatgcgtttgaagaggctgaggctagcgcgt 340
Query: 61 gccacactgtcaaaccaagcaaactatagcaggggcggtcaggattgttaaaaagattta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gccacactgtcaaaccaagcaaactatagcaggggcggtcaggattgttaaaaagattta 280
Query: 121 cccagaatctttgggtaagtgtatttgggcctttgtgtggagtaagctgagctgcccggt 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 279 cccagagtctttgggtaagtgtatttgggcctttgtgtggagtaagctgagctgccctgt 220
Query: 181 gtgagaaaagccaactgac 199
|||||||||||||||||||
Sbjct: 219 gtgagaaaagccaactgac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 600
Length adjustment: 8
Effective length of query: 192
Effective length of database: 592
Effective search space: 113664
Effective search space used: 113664
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no480_m07.g1 MSMg01no480_m07.g1 CHROMAT_FILE:
MSMg01no480_m07.g1 PHD_FILE: MSMg01no480_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:11 2005
(395 letters)
>mm_chr2_168219391_168220185
Length = 795
Score = 698 bits (361), Expect = 0.0
Identities = 387/397 (97%), Gaps = 4/397 (1%)
Strand = Plus / Plus
Query: 1 ctagggggacacttttgtgaggatgtctggtggtacatatgccaagaagggctgggatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctagggggacacttttgtgaggatgtctggtggtacatatgccaagaagggctgggatct 260
Query: 61 ggacagtcgatggggctggcactgagatggacagatctatcactctccagcacgccaagg 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggacagtcgatggggctgtcactgagatggacagatctatcactctccagcacgccaagg 320
Query: 121 gtgcgttcagacaagtcacctccgtggatcgtcacaacgtgttttgtgagggaagaagtc 180
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgcgtacaggcaagtcacctccgtggatcgtcacaacgtgttttgtgagggaagaagtc 380
Query: 181 aggtggctttggggacacaagtgatttcagccaccatgccgaatccaatgggtttctctc 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 aggtggctttggggacacaagtgatttcagccaccatgccgaatccaaggggtttctctc 440
Query: 241 ctcccgtcctgtgcaatggtctccagaagggtggagtcgctggcctgcctgtctctccac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcccgtcctgtgcaatggtctccagaagggtggagtcgctggcctgcctgtctctccac 500
Query: 301 tgacacttcacaagtgtttattctagcaaagtta--ttctgaactttgtgtgccacctta 358
|||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct: 501 tgacacttcacaagtgtttattctagca--ggtggcttctgaactttgtgtgccacctta 558
Query: 359 tcccctaccgggacaaaggaagaattgctctcccctg 395
|||||||||||||||||||||||||||||||||||||
Sbjct: 559 tcccctaccgggacaaaggaagaattgctctcccctg 595
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space: 303396
Effective search space used: 303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
