Query= MSMg01no481_b22.b1 MSMg01no481_b22.b1 CHROMAT_FILE:
MSMg01no481_b22.b1 PHD_FILE: MSMg01no481_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:38 2005
(705 letters)
>mm_chr2_43048961_43050065
Length = 1105
Score = 1284 bits (664), Expect = 0.0
Identities = 694/706 (98%), Gaps = 5/706 (0%)
Strand = Plus / Minus
Query: 5 gaattagagagtgaatctcgttattataagaacctatattgaaataatatcagtataata 64
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 gaattagagagtgaaactggttattataagaacctatattgaaataatatcagtataata 705
Query: 65 agaactaacacctgccaccaattaattctcaagaatgatagcaacaaaatgtgttggaac 124
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 704 agaactaacacctgccaccaattaattctcaagaatgatagtaacaaaatgtgttggaac 645
Query: 125 aaagagaaaagttggaataaatggatctggcaaaagtaagtatccatgctgtaaaatgaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 aaagagaaaagttggaataaatggatctggcaaaagtaagtatccatgctgtaaaatgaa 585
Query: 185 gtagacccatgtctcacaagccacaaatcaagtcaagatgaaaaaagctctccaaggtct 244
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gtagacccatgtctcccaagccacaaatcaagtcaagatgaaaaaagctctccaaggtct 525
Query: 245 cagccaaactttcagtttctgatgcttcatcttccttctcataatggtctatcagacagc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 cagccaaactttcagtttctgatgcttcatcttccttctcataatggtctatcagacagc 465
Query: 305 atatactgaaatttcatgtttcttttactttgaagagttagtttgtctactcaccatctg 364
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 464 atatactgaaatttcatgtttcttttactttgaagagttagtttgtctattcaccatctg 405
Query: 365 aatgatgcttcttctgtacttagagaatattttacatttgtttagctacacctgcatgta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aatgatgcttcttctgtacttagagaatattttacatttgtttagctacacctgcatgta 345
Query: 425 atcaattgttatcatttttccaatatttcttcttactcattaatgtagtattctttcatc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 atcaattgttatcatttttccaatatttcttcttactcattaatgtagtattctttcatc 285
Query: 485 ttgaagttcataactcaagatattttgtgggagatgtctggtcaagatacattgtcttag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ttgaagttcataactcaagatattttgtgggagatgtctggtcaagatacattgtcttag 225
Query: 545 cttcagtttatctggcaatgtcttatcgtttcttttcttctcttttctttt--ctttt-- 600
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 224 cttcagtttatctggcaatgtcttatcgtttcttttcttctcttttcttttttcttttct 165
Query: 601 -ttcttttcttttcctttcttttctttttttttcttttgtccagaataacttttgacaac 659
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 tttcctttcttttcttttcttttctttttttttcttttgtccagaataacttttgacaac 105
Query: 660 tctttcttcatagtgacaaaaatgtcaggaccccattttctgtctt 705
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 tctttcttcatagtgacaaaaatgtcaggaccccattttctgtctt 59
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1105
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1095
Effective search space: 761025
Effective search space used: 761025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no481_b22.g1 MSMg01no481_b22.g1 CHROMAT_FILE:
MSMg01no481_b22.g1 PHD_FILE: MSMg01no481_b22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:38 2005
(641 letters)
>mm_chr2_42962473_42963513
Length = 1041
Score = 1232 bits (637), Expect = 0.0
Identities = 640/641 (99%)
Strand = Plus / Plus
Query: 1 aaacttcacctccctaaaggattacttcagagattggcactatgggagagtgatggaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacttcacctccctaaaggattacttcagagattggcactatgggagagtgatggaaat 260
Query: 61 gtagggagtagagccgttaaaaagcttttggacattcagtttgaccatggccctagtgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagggagtagagccgttaaaaagcttttggacattcagtttgaccatggccctagtgag 320
Query: 121 accaggagagctatcccagtcccagatctagggctttgtgttgcctctccactatgaact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accaggagagctatcccagtcccagatctagggctttgtgttgcctctccactatgaact 380
Query: 181 atttaagaatgtgaaggggtgggtattatagactaaaactacaggatcttgacaacacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttaagaatgtgaaggggtgggtattatagactaaaactacaggatcttgacaacacag 440
Query: 241 ggcaacaacagaatatctgagagaagacctgataaggaaacagtattgatagtatagcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcaacaacagaatatctgagagaagacctgataaggaaacagtattgatagtatagcag 500
Query: 301 aagccagaggcctcaaaccacaccaatgacacattgcaatgaacatttgcaagtaaacct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagccagaggcctcaaaccacaccaatgacacattgcaatgaacatttgcaagtaaacct 560
Query: 361 gtttggaacaatagggtatactgtgtgacacaccatgacacactacagcttcaacagcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtttggaacaatagggtatactgtgtgacacaccatgacacactacagcttcaacagcaa 620
Query: 421 tttttttccttctcttttttattgtttttatttttattttattttccttttgtttttctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttttttccttctcttttttattgtttttatttttattttattttccttttgtttttctt 680
Query: 481 ttggggctgttgcaagggtaaaaggcagatataaatggtcatggagaagagtggtatttt 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttggggctgttgcaagggtaaagggcagatataaatggtcatggagaagagtggtatttt 740
Query: 541 gggtactagatatgaaattcatattttattcataaagaatgaataaaatagttacctgaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gggtactagatatgaaattcatattttattcataaagaatgaataaaatagttacctgaa 800
Query: 601 aaaaaatggacagtgggaatccagctgctcctcttcctttg 641
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaaaaatggacagtgggaatccagctgctcctcttcctttg 841
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
