BAC Information

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BAC

Clone NameMSMg01-481C07
Chromosome2 (Build37)
Map Location 107,259,354 - 107,415,650
singlet/doubletdoublet
Overlap genenone
Upstream gene9330126M15, C130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb, Kcna4
Downstream geneLOC100043078, LOC668790
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481C07.T7 (MSMg01no481_c07.b1)MSMg01-481C07.TJ (MSMg01no481_c07.g1)
ACCAG561618AG561619
length755750
length of high quality
(start - end)		686 (70 - 755)671 (59 - 729)
definitionCHROMAT_FILE: MSMg01no481_c07.b1 PHD_FILE: MSMg01no481_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:40 2005CHROMAT_FILE: MSMg01no481_c07.g1 PHD_FILE: MSMg01no481_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,259,354 - 107,260,039)(107,415,325 - 107,415,650)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAAAGGATATTTCCCAAGACAGTCAAGGAAAATTGGGTGGATGAGATCC
TAGATTTCCACTATGATCTACTGAAGTTTTACAGTGTTGTCAAACTGGAT
TGTGCTGGGGAACTTGGATATCCACACAGCAAAGAATGGAGCTGTGCTTT
CTCCTTACATTATACAACAAATGATTGTGAAAGGGTTGTCTACTGAAACT
GAATGAGGGAATGCATTTGTACTAATAGAAAATGAGTAGTAAGATCAAGC
CTATTTGATTGTAACACCCCTGATCTAGTTAATTTTGGGCCATATTCGCT
ATTTAAAATTGTCTTTAAGATCATCATCTGCCACTTCCTATCCTCTGGGG
ATGCTGTCAGATGCACTGTCATGCTCTCGTTTTAGTCATGCTGATGTAGT
GCAAATTATTTTACCTTGGTAGTTTAAAAGTGGTTCATTCTTCATGTTAA
CATTTTTGACATGGAAGATTTAGTGTACTGAGAACTGTGTTAGAGTCAAA
TAAAAAATGTAACACTTAAGGCAATGAAAGTGAAATCGGAAGTAAGGTAT
CAATTATTTTGTAGAACATTTAGAGCTTGGTAAAAGAATTAATTTGATTT
GGTGACTAGACTCAGCATGACTATATCTGAATGGGGCTTTAGATATATCA
CGGAAATTAATTTTTAATTTTATTGTGAATTAGCTATAAATGTATATATT
ATGGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCCCAATTCTTTGTATATATTAGATATTAGCCCTCTATCA
GATTTAGGATTGCTAAAGATCTTTTCCCAAGCTATTGTTACCTTGTCTTA
TCGACAGTGTCCTTTGCTTTTACAGAAGCTTTGCAATCCTATGAGGTCTC
ATTGTTGATTCTTGATCTTACTGCACACACTTTTGATCCAGATATTGAAA
TAGGTAGTCACAACTTTAATCTGGGCCATATGTTCTACTAGCAGTCTAAA
TAAGGACATGGAAGAAGGAAGTGTTTGCTCTTTACTTACTTCCTCTCACC
TTGCCAGATCATCCATTCCTTCATGACCTTTCGAGCTTATTGTTTTGAGA
TCCCAGTATTTACTGAAGACCATCTAAGACACTTGGCTTTGTGGACTGAA
CCATCACTGGATTCTTGAACTTTCTTTTAACAGCTAGTCATATTTAGATT
ATCAAAACTGCAGGCTTCAAGTATTCTAATAAATCACTTTTACATTTATA
TATAGAGAGAGATTCATTCTATAAGTTCTGTAATTCAAGAGGACCCTAAT
ACATCAATACTATAATTAACAGAATTCACAGAAGCATAGAATTCTTTAGA
TTACTTTGTTCCTGCAGCATTCTCTATATTGCTTAGTAACTCATGCCTTC
TAGTGAGCATAACAGCTAGTTCCGTTTTAGCCCAATGCCCCTGTGCTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_c07.b1 MSMg01no481_c07.b1 CHROMAT_FILE:
MSMg01no481_c07.b1 PHD_FILE: MSMg01no481_c07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:40 2005
         (686 letters)



>mm_chr2_107259154_107260239
          Length = 1086

 Score = 1319 bits (682), Expect = 0.0
 Identities = 685/686 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagtcaaggaaaattgggtggatgagatcctagatttccactatgatctactgaagttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagtcaaggaaaattgggtggatgagatcctagatttccactatgatctactgaagttt 260

                                                                       
Query: 61  tacagtgttgtcaaactggattgtgctggggaacttggatatccacacagcaaagaatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacagtgttgtcaaactggattgtgctggggaacttggatatccacacagcaaagaatgg 320

                                                                       
Query: 121 agctgtgctttctccttacattatacaacaaatgattgtgaaagggttgtctactgaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctgtgctttctccttacattatacaacaaatgattgtgaaagggttgtctactgaaac 380

                                                                       
Query: 181 tgaatgagggaatgcatttgtactaatagaaaatgagtagtaagatcaagcctatttgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaatgagggaatgcatttgtactaatagaaaatgagtagtaagatcaagcctatttgat 440

                                                                       
Query: 241 tgtaacacccctgatctagttaattttgggccatattcgctatttaaaattgtctttaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtaacacccctgatctagttaattttgggccatattcgctatttaaaattgtctttaag 500

                                                                       
Query: 301 atcatcatctgccacttcctatcctctggggatgctgtcagatgcactgtcatgctctcg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcatcatctgccacttcctatcctctggggatgctgtcagatgcactgtcatgctctcg 560

                                                                       
Query: 361 ttttagtcatgctgatgtagtgcaaattattttaccttggtagtttaaaagtggttcatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttagtcatgctgatgtagtgcaaattattttaccttggtagtttaaaagtggttcatt 620

                                                                       
Query: 421 cttcatgttaacatttttgacatggaagatttagtgtactgagaactgtgttagagtcaa 480
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttcatgttaacattttagacatggaagatttagtgtactgagaactgtgttagagtcaa 680

                                                                       
Query: 481 ataaaaaatgtaacacttaaggcaatgaaagtgaaatcggaagtaaggtatcaattattt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ataaaaaatgtaacacttaaggcaatgaaagtgaaatcggaagtaaggtatcaattattt 740

                                                                       
Query: 541 tgtagaacatttagagcttggtaaaagaattaatttgatttggtgactagactcagcatg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtagaacatttagagcttggtaaaagaattaatttgatttggtgactagactcagcatg 800

                                                                       
Query: 601 actatatctgaatggggctttagatatatcacggaaattaatttttaattttattgtgaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 actatatctgaatggggctttagatatatcacggaaattaatttttaattttattgtgaa 860

                                     
Query: 661 ttagctataaatgtatatattatggg 686
           ||||||||||||||||||||||||||
Sbjct: 861 ttagctataaatgtatatattatggg 886


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no481_c07.g1 MSMg01no481_c07.g1 CHROMAT_FILE:
MSMg01no481_c07.g1 PHD_FILE: MSMg01no481_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:40 2005
         (671 letters)



>mm_chr2_107414580_107415650
          Length = 1071

 Score =  623 bits (322), Expect = 0.0
 Identities = 325/326 (99%)
 Strand = Plus / Minus

                                                                        
Query: 346  cagtatttactgaagaccatctaagacacttggctttgtggactgaaccatcactggatt 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1071 cagtatttactgaagaccatctaagacacttggctttgtggactgaaccatcactggatt 1012

                                                                        
Query: 406  cttgaactttcttttaacagctagtcatatttagattatcaaaactgcaggcttcaagta 465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 cttgaactttcttttaacagctagtcatatttagattatcaaaactgcaggcttcaagta 952

                                                                        
Query: 466  ttctaataaatcacttttacatttatatatagagagagattcattctataagttctgtaa 525
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 951  ttctaataaatcacttttacatttatatatagagagagattcattctatacgttctgtaa 892

                                                                        
Query: 526  ttcaagaggaccctaatacatcaatactataattaacagaattcacagaagcatagaatt 585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891  ttcaagaggaccctaatacatcaatactataattaacagaattcacagaagcatagaatt 832

                                                                        
Query: 586  ctttagattactttgttcctgcagcattctctatattgcttagtaactcatgccttctag 645
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831  ctttagattactttgttcctgcagcattctctatattgcttagtaactcatgccttctag 772

                                      
Query: 646  tgagcataacagctagttccgtttta 671
            ||||||||||||||||||||||||||
Sbjct: 771  tgagcataacagctagttccgtttta 746


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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