BAC Information

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BAC

Clone NameMSMg01-481L12
Chromosome2 (Build37)
Map Location 164,178,287 - 164,178,911
singlet/doubletsinglet
Overlap genenone
Upstream geneJph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5
Downstream geneSlpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5, Ncoa5, Cd40, Cdh22, Slc35c2, Elmo2, Gm1008
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481L12.T7 (MSMg01no481_l12.b1)MSMg01-481L12.TJ (MSMg01no481_l12.g1)
ACCAG562058AG562059
length751876
length of high quality
(start - end)		658 (40 - 697)99 (69 - 167)
definitionCHROMAT_FILE: MSMg01no481_l12.b1 PHD_FILE: MSMg01no481_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:27 2005CHROMAT_FILE: MSMg01no481_l12.g1 PHD_FILE: MSMg01no481_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
GTGTAGGTTCCATGCCCAGCAACTTTGATGAATCTTGGCTTACTAATGTT
ATTGAGTGTTATAAAATTGCCATATAAAATGATAATATTTAAGATAGGCA
AAAATGGTGGCAGGCACACACCCATAATCCCAGCACTTAGGAGGTAGAGG
CAGGAGCATAAAAAGTTTGAGGCCAGTCTCAGCTACATAAGACTTTGTTA
CACACACACACACACACACACACACACACACACACACACACACACACACT
CTTACACTTAAAAATAGAAATCAAACATGACCATTTTGTATGGTTTCCTA
TCTTATACATACTCTGTTAGTGCAGCATCCTGTGTTTCCTGTGTTGCTTT
AGGCATCTTGTCAGCTGCTGGGAAAGCGTCTGTCCCTATCTTACACACTC
CATTGGCGTAGCATCCTGTGTTGCTGTAGATATCTTGTACATTGTTGGAG
AACAGTGCTTCCCCTGCTGTTTCTGACCTCAGTGAGAAGTCTATTGGAAA
TTCAACATAATATGTGTTTTAGAAACATCGTTTCAGGTGCGTTTCTCTGC
ATGTTTATTTCTAGTCTTACTCTTTTTTCTTTTTTCGATTGTTATTTAAG
TGTACTTTATGTCTAACGAGTGCTCTATCTGCATGTGCACCTGCATGACA
GAAGAGGGCGCTATATCTCATTATAGATGGTTGTGAGTGGCCATGTGGTT
G

CTGTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTGGGTATGTGGAGAGATATTGAGAGACATG
CAGCGAGGGGAAATATTCTCCACCTAGCCTGGAAGAAAAAGGAGGAGGGG
GAGGGGAGGGAGAAGGAAGAAGAAGAAGAGGAGGATGATTTATTTTTTTC
TTTTTTTTTCTCTTTTCTTTTTCTTTTTTTTTCTTATTTTTTCTTCCCTC
TCTTTCTTTTTTTCTTTTCTTTTTCTCTCTTTTTTTCCTTTTTTCTTCTT
TTTTTTCTCTTTTCTTTCCTTTTTTTTTTTTTTTTTTTTCTTTTTCTTTT
CTCTCCTTTCCTCTTTTTCTTTCTTTTTCTTTCTTTTTTTTTTTTTTTTT
TTTCCGTTTTTTCTTTTTTTTATCCCCCCCCTTTCTTTCTTTTTGTTTTT
CTTTTTTTTTTTTCTTTTCTTTTTTTTCTTTCTTCCTTTCTTTCCTTTTT
TCTCCTATCTTTTTTCTTTTTTTATCTTTCCTTTTCTTTCCTTTTTTCCT
TTGTCTTTCTTGTTTTTTTTCCTTTTCTTTTTCTTCCCTATCTTTTCTTT
CCTTTTTCCCCCTCTTTTTTTCCTTTTTTTTTCTTTCTTTGTTCCTTCTC
TCTTTTTTTCCTTTTTTTTCTTGTTCTCGCTTTACTTTTCCCTTTTTTTC
TTTTTTCTCTTTTTCTTTTCTTCTTCTTCTCTCCCTCTTTTCTCTTTTTT
TTTTTTCTTTTCTTTTCCCTCCTCTTCTCTCTTCTCTTTTCTTCTTCTCT
TTTCCTCTCTTCGTCTTCCTCTTCTCTTGCCCTTCTCCTCGCTCTTTTTT
CTTTTTCTCCCCCTTCTTTTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_l12.b1 MSMg01no481_l12.b1 CHROMAT_FILE:
MSMg01no481_l12.b1 PHD_FILE: MSMg01no481_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:27 2005
         (658 letters)



>mm_chr2_164178083_164179140
          Length = 1058

 Score = 1067 bits (552), Expect = 0.0
 Identities = 616/656 (93%), Gaps = 33/656 (5%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtgtagg-t-tccatgcccagcaactttgatgaatcttggcttactaatgtta 62
           |||||||||||||| | |  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtgtaggctgt--atgcccagcaactttgatgaatcttggcttactaatgtta 262

                                                                       
Query: 63  ttgagtgttataaaattgccatataaaatgataatatttaagataggcaaaaatggtggc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttgagtgttataaaattgccatataaaatgataatatttaagataggcaaaaatggtggc 322

                                                                       
Query: 123 aggcacacacccataatcccagcacttaggaggtagaggcaggagcataaaaagtttgag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aggcacacacccataatcccagcacttaggaggtagaggcaggagcataaaaagtttgag 382

                                                                       
Query: 183 gccagtctcagctacataagactttgttacacacacacacacacacacacacacacacac 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gccagtctcagctacataagactttgttacacacacacacacacacacacacacacacac 442

                                                                       
Query: 243 acacacacacacacacactcttacacttaaaaatagaaatcaaacatgaccattttgtat 302
                               ||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 --------------------ttacacttaaaaatagaaatcaaacatgaccattttgtat 482

                                                                       
Query: 303 ggtttcctatcttatacatactctgttagtgcagcatcctgtgtttcctgtgttgcttta 362
           |||||||||||||||||||||||||||||||||||||||||||||         ||||||
Sbjct: 483 ggtttcctatcttatacatactctgttagtgcagcatcctgtgtt---------gcttta 533

                                                                       
Query: 363 ggcatcttgtcagctgctgggaaagcgtctgtccctatcttacacactccattggcgtag 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ggcatcttgtcagctgctgggaaagcgtctgtccctatcttacacactccattggcgtag 593

                                                                       
Query: 423 catcctgtgttgctgtagatatcttgtacattgttggagaacagtgcttcccctgctgtt 482
           |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 594 catcctgtgttgctttagatatcttgtacattgttggagaacagtgtttcccctgctgtt 653

                                                                       
Query: 483 tctgacctcagtgagaagtctattggaaattcaacataatatgtgttttagaaacatcgt 542
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 654 tctgacctcagtgagaagtctattggaaattcaacttaatatgtgttttagaaacatcat 713

                                                                       
Query: 543 ttcaggtgcgtttctctgcatgtttatttctagtcttactcttttttcttttttcgattg 602
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ttcaggtgcgtttcccttcatgtttatttctagtcttactcttttttcttttttcgattg 773

                                                                   
Query: 603 ttatttaagtgtactttatgtctaacgagtgctctatctgcatgtgcacctgcatg 658
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 774 ttatttaagtgtactttatgtctaacgagtgctctacctgcatgtgcacctgcatg 829


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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