BAC Information

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BAC

Clone NameMSMg01-481L24
Chromosome2 (Build37)
Map Location 121,499,617 - 121,681,140
singlet/doubletdoublet
Overlap geneFrmd5
Upstream geneStard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76
Downstream geneCasc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481L24.T7 (MSMg01no481_l24.b1)MSMg01-481L24.TJ (MSMg01no481_l24.g1)
ACCAG562082AG562083
length754753
length of high quality
(start - end)		621 (76 - 696)642 (75 - 716)
definitionCHROMAT_FILE: MSMg01no481_l24.b1 PHD_FILE: MSMg01no481_l24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:29 2005CHROMAT_FILE: MSMg01no481_l24.g1 PHD_FILE: MSMg01no481_l24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,680,534 - 121,681,140)(121,499,617 - 121,500,258)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGAATTAAATCTTCCTTTACCAATGAACTTAGTCATTTCTACAAC
CTGCTGATTAGTTAGACATCTTTAAGTCTGCAAGATCTTCATCTGACATT
ACATTCTGCTATCTTGCTAGAATTTTGACAAGGCCTCTGGGATGATGTAG
TTGTCTTGAGTGGTTTTGTCTGTTAACATTCACTCCTCTAGTATTATTCT
ACCATATTGAAATGAACCCTGGTGGTGGGATGCCAAATGTACCCTGTAGG
TTATTGCTGAAGGTCAAACGCAGGATCTTCTACATGTTAGATAAGTGCTC
TATCACAGAGCTACATCCCTGCCTCCAAGAAAAAAGAAATTGTAATCATA
TTTTCACTACCAATCTTCTTTGTTAAAATATAATGTGGCAGGTCACCTGA
GGAGAGAGGACAATAACCAGATCATGTTTTATGGAGAAGGACACAGTTGA
ATCGCTGATAGTTCTGGGAATAGTGACAAAATTCTAAGACCAAGATTACC
TGAAGATGACCAATAAGGTAATAACCAGAAATCACTTAATGTTCTATTGA
ATGAACACATATAATGATGATGATGATAATAATAATAGTAATTGAATGAA
CATATAATAATGTTATATTGAATTCAACATGGGTGCTTGGAGAGGATCCG
TGTTCAATTCCCAGAGCTCACACAATAGCTCCTAAGCATCTGTTACTCCA
GTTC

CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGTGTTGAACAGGTTTCATATTTAG
AGCATAGATGTAAAGATTTTGCACATTCCTGGCTGGATGTGAGCCTAGCA
CACAGTACACTGGTTGGCTTGCTTCTTTGGCTTTTACTAGACAGTCTTTT
GCCAAATTCTTCCGAAATTTGTTTAAAGGCATCAAATGCATTTTGCACCC
CAAAGAGTATTTGAGTTTCTTGTCCAAGGAATGTGTGTTGATTATGGTAT
GACTACTAGTGTTGTGGGGTGCTACAGACGTAGTGAAATTTGGTGGCAGC
TCTGGGTTTGTCTCTGAGGTGCGATATGTGAGTACTGATCTTGCTAGAGT
TTGGTACCTATGCTTTTCTAGGTACCTATTGAACTGCCCCCCCCACCCGT
TTTAAATGTATAATGTCTTATCTTCTCTAATTTCACATCATGAGCAGCCC
TGTGGCTATTCTAAGGCAAGTGCAGATGAGGAGGTCAGCCAAGAACGTTT
TGTTCATTAGCTGAGAGGTTTGTTCTCGTTTGTCCCACAGCTAACTAAGT
AGCATGACTCAGAAGCATTGCTCGTATGCACCTGACAGATCTCCCCGAAT
GCCACCTCCTCCCCCTTAAAGGCACCGCTTGGATGAGCTAAGTGAGAGAT
GTATGATGACTGAAAAGAGTCCTCTGGCCAGAGAAACTGCATCACCAAAA
GTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_l24.b1 MSMg01no481_l24.b1 CHROMAT_FILE:
MSMg01no481_l24.b1 PHD_FILE: MSMg01no481_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:29 2005
         (621 letters)



>mm_chr2_121680120_121681140
          Length = 1021

 Score = 1166 bits (603), Expect = 0.0
 Identities = 606/607 (99%)
 Strand = Plus / Minus

                                                                        
Query: 15   atttctacaacctgctgattagttagacatctttaagtctgcaagatcttcatctgacat 74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 atttctacaacctgctgattagttagacatctttaagtctgcaagatcttcatctgacat 962

                                                                        
Query: 75   tacattctgctatcttgctagaattttgacaaggcctctgggatgatgtagttgtcttga 134
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  tacattctgctatcttgctagaattttgacaaggcctctgggatgatgtagttgtcttga 902

                                                                        
Query: 135  gtggttttgtctgttaacattcactcctctagtattattctaccatattgaaatgaaccc 194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  gtggttttgtctgttaacattcactcctctagtattattctaccatattgaaatgaaccc 842

                                                                        
Query: 195  tggtggtgggatgccaaatgtaccctgtaggttattgctgaaggtcaaacgcaggatctt 254
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 841  tggtggtgggatgccaaatgtaccctgtaggttattgctgaaggtcaaacgcaggacctt 782

                                                                        
Query: 255  ctacatgttagataagtgctctatcacagagctacatccctgcctccaagaaaaaagaaa 314
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  ctacatgttagataagtgctctatcacagagctacatccctgcctccaagaaaaaagaaa 722

                                                                        
Query: 315  ttgtaatcatattttcactaccaatcttctttgttaaaatataatgtggcaggtcacctg 374
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  ttgtaatcatattttcactaccaatcttctttgttaaaatataatgtggcaggtcacctg 662

                                                                        
Query: 375  aggagagaggacaataaccagatcatgttttatggagaaggacacagttgaatcgctgat 434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  aggagagaggacaataaccagatcatgttttatggagaaggacacagttgaatcgctgat 602

                                                                        
Query: 435  agttctgggaatagtgacaaaattctaagaccaagattacctgaagatgaccaataaggt 494
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  agttctgggaatagtgacaaaattctaagaccaagattacctgaagatgaccaataaggt 542

                                                                        
Query: 495  aataaccagaaatcacttaatgttctattgaatgaacacatataatgatgatgatgataa 554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  aataaccagaaatcacttaatgttctattgaatgaacacatataatgatgatgatgataa 482

                                                                        
Query: 555  taataatagtaattgaatgaacatataataatgttatattgaattcaacatgggtgcttg 614
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  taataatagtaattgaatgaacatataataatgttatattgaattcaacatgggtgcttg 422

                   
Query: 615  gagagga 621
            |||||||
Sbjct: 421  gagagga 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no481_l24.g1 MSMg01no481_l24.g1 CHROMAT_FILE:
MSMg01no481_l24.g1 PHD_FILE: MSMg01no481_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:29 2005
         (642 letters)



>mm_chr2_121499417_121500458
          Length = 1042

 Score = 1241 bits (642), Expect = 0.0
 Identities = 642/642 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtgttgaacaggtttcatatttagagcatagatgtaaagattttgcacattcctggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagtgttgaacaggtttcatatttagagcatagatgtaaagattttgcacattcctggct 260

                                                                       
Query: 61  ggatgtgagcctagcacacagtacactggttggcttgcttctttggcttttactagacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggatgtgagcctagcacacagtacactggttggcttgcttctttggcttttactagacag 320

                                                                       
Query: 121 tcttttgccaaattcttccgaaatttgtttaaaggcatcaaatgcattttgcaccccaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttttgccaaattcttccgaaatttgtttaaaggcatcaaatgcattttgcaccccaaa 380

                                                                       
Query: 181 gagtatttgagtttcttgtccaaggaatgtgtgttgattatggtatgactactagtgttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtatttgagtttcttgtccaaggaatgtgtgttgattatggtatgactactagtgttg 440

                                                                       
Query: 241 tggggtgctacagacgtagtgaaatttggtggcagctctgggtttgtctctgaggtgcga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggggtgctacagacgtagtgaaatttggtggcagctctgggtttgtctctgaggtgcga 500

                                                                       
Query: 301 tatgtgagtactgatcttgctagagtttggtacctatgcttttctaggtacctattgaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatgtgagtactgatcttgctagagtttggtacctatgcttttctaggtacctattgaac 560

                                                                       
Query: 361 tgccccccccacccgttttaaatgtataatgtcttatcttctctaatttcacatcatgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgccccccccacccgttttaaatgtataatgtcttatcttctctaatttcacatcatgag 620

                                                                       
Query: 421 cagccctgtggctattctaaggcaagtgcagatgaggaggtcagccaagaacgttttgtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagccctgtggctattctaaggcaagtgcagatgaggaggtcagccaagaacgttttgtt 680

                                                                       
Query: 481 cattagctgagaggtttgttctcgtttgtcccacagctaactaagtagcatgactcagaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cattagctgagaggtttgttctcgtttgtcccacagctaactaagtagcatgactcagaa 740

                                                                       
Query: 541 gcattgctcgtatgcacctgacagatctccccgaatgccacctcctcccccttaaaggca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcattgctcgtatgcacctgacagatctccccgaatgccacctcctcccccttaaaggca 800

                                                     
Query: 601 ccgcttggatgagctaagtgagagatgtatgatgactgaaaa 642
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ccgcttggatgagctaagtgagagatgtatgatgactgaaaa 842


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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