CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACAACACATTGCTTGCATCTACCACTTGTTCATGACTGTCCTTCCTT
TTCATGCCTGTTATTCTAGACTCAGGTGACCAACTAGCAGTGCCCCAGAT
GGTTTACTGTCTCCCAGTTTAAAAAGCAAGCCAGTATTTACCCCAGTCAG
TCCAACATGCCAGCCCTTCTGTGGATTAAATTCTGGATTTTAAAAGCCTC
AGTCATATGAATTCCCCTATGATCTATAAAGAATTCTTGTTTATCTCCTT
GAAAACAAGTATGCTTCTTTCCTCCTTGAAATGTAGATAGGGACTGAATG
CCAGTGGCTTTGTGGAGGTTTGATTAAGAAATATCTCCCATAGGCTACTG
TATTTGAATATTTGGTCCCATCACTACTCGTGGTGTTAGGTGGGGACATT
ATACAATACAGCTTTGCTGAAGGAAGCATATTACTGTGGGTGAACTTTGA
GGGTTTATAGCCTCAAAGCCTTCGAGATCTATCTCTCTACTTCCTGTGTG
TACATAAAGAAGTGATCACCAGCCTGCAGTTCCTATCATCCTGCTATGCC
TTCCTGGACATTAGGACTCTCCCTACAGGACTCTAAGGTAAAATAAACTC
TCCTGTAAGTTGCTTTTGGTCATGGCATTTCGTCACAGCAACAGGAATGT
AACTAATAGAGGCTGCTAACCCTCCTGATTACATTGCTGCTTCCCACTGG
CTCTGCAAGAAAAAGCAAGTTCATGGGN

GAAGCTGGAGGCGCTGGCTTCGAACTTGTGCTGGGTATAGTCTTTCCCCC
TATCTCACTGAGAATGCCAATNTTGAAAACCCTGAAAAAGGTCCCATCTT
ATCTCCGGAATGTCAATCAAAAAACCTGATTCCTTCTCACCNTCCAAGGG
TAAAAAAAATTCGGGGACCAAAATGGGGAAGGGTTGGAAAAAAAACCCCC
CCCCGTTGGGGGGTGAGGTGGAAACCCCCAAAAAACGGGGGGTTTCCAAA
TTTTTGTGGTCTGGGGGGGCCCCACACCCCCCGCGTTTTTAAAAAATTTT
CTTAAAAAAAAAAACCCCCCCCTTCCCCCCTTTTTTTTTTTTAAAAAAAA
AAAAAACCCCCCCCCCCGGAAAAAAAAAAAAAGGGGTTTTTTTNNNGGGC
CCCCCCTAAAAAAAAAAAAATTTTTTTTTTTTGGGGGGGTNNTTTTTTTT
TTTTTGTGGTGGCCCCAAAATAAACAAAACTCTTTCTNTTTTTTTAATCC
CCCTCACCACATTTTTTTTTTTTTTTTAAAAAAAAAGAAAAAAAACTTCT
CCCCCCCCCTTCTTCTCCCCTNGTNNNNNANAAAAAAAAAAAAAAAAATN
ATNCTCCCCCCCCCCCCCCCCCCCCTCTCTTCTTTTTTTAATTTTAATAT
AATTTACTTCTTGTGGGTGGGGGGGGGGGTGGGG

Query= MSMg01no481_m23.b1 MSMg01no481_m23.b1 CHROMAT_FILE:
MSMg01no481_m23.b1 PHD_FILE: MSMg01no481_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:34 2005
         (610 letters)



>mm_chr2_21896361_21897369
          Length = 1009

 Score = 1125 bits (582), Expect = 0.0
 Identities = 603/610 (98%), Gaps = 1/610 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcatctaccacttgttcatgactgtccttccttttcatgcctgttattctagactcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcatctaccacttgttcatgactgtccttccttttcatgcctgttattctagactcagg 260

                                                                       
Query: 61  tgaccaactagcagtgccccagatggtttactgtctcccagtttaaaaagcaagccagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 tgaccaactagcagtgccccagatggtttactgtctcccagtttaaaaagcaagccagtg 320

                                                                       
Query: 121 tttaccccagtcagtccaacatgccagcccttctgtggattaaattctggattttaaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaccccagtcagtccaacatgccagcccttctgtggattaaattctggattttaaaag 380

                                                                       
Query: 181 cctcagtcatatgaattcccctatgatctataaagaattcttgtttatctccttgaaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctcagtcatatgaattcccctatgatctataaagaattcttgtttatctccttgaaaac 440

                                                                       
Query: 241 aagtatgcttctttcctccttgaaatgtagatagggactgaatgccagtggctttgtgga 300
           ||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||
Sbjct: 441 aagtatgcttctttcctcctt-aaatttaggtagggactgaatgccagtggctttgtgga 499

                                                                       
Query: 301 ggtttgattaagaaatatctcccataggctactgtatttgaatatttggtcccatcacta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggtttgattaagaaatatctcccataggctactgtatttgaatatttggtcccatcacta 559

                                                                       
Query: 361 ctcgtggtgttaggtggggacattatacaatacagctttgctgaaggaagcatattactg 420
           ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 560 ctcgtggtgttaggtggggacattatataatacagccttgctgaaggaagcatattactg 619

                                                                       
Query: 421 tgggtgaactttgagggtttatagcctcaaagccttcgagatctatctctctacttcctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgggtgaactttgagggtttatagcctcaaagccttcgagatctatctctctacttcctg 679

                                                                       
Query: 481 tgtgtacataaagaagtgatcaccagcctgcagttcctatcatcctgctatgccttcctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgtgtacataaagaagtgatcaccagcctgcagttcctatcatcctgctatgccttcctg 739

                                                                       
Query: 541 gacattaggactctccctacaggactctaaggtaaaataaactctcctgtaagttgcttt 600
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gacattaggactctccctataggactctaaggtaaaataaactctcctgtaagttgcttt 799

                     
Query: 601 tggtcatggc 610
           ||||||||||
Sbjct: 800 tggtcatggc 809


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1009
Length adjustment: 10
Effective length of query: 600
Effective length of database: 999
Effective search space:   599400
Effective search space used:   599400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)