Query= MSMg01no481_n18.b1 MSMg01no481_n18.b1 CHROMAT_FILE:
MSMg01no481_n18.b1 PHD_FILE: MSMg01no481_n18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:38 2005
(703 letters)
>mm_chr2_43394354_43395456
Length = 1103
Score = 1201 bits (621), Expect = 0.0
Identities = 694/747 (92%), Gaps = 45/747 (6%)
Strand = Plus / Plus
Query: 1 cagttcttatctatgctgagttcaactgtgataagcatggatgtgaaggtatccttcctt 60
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 cagtttttagctatgctgagttcaactgtgataagcatggatgtgaaggtatccttcctt 215
Query: 61 gcagtaggatataaaatcctctgggtacatggccaggatgatatagttaggtcatatggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gcagtaggatataaaatcctctgggtacatggccaggatgatatagttaggtcatatggc 275
Query: 121 aattctgtctgtttcttttcctttcttttcttttcctttcttttccc------------- 167
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aattctgtctgtttcttttcctttcttttcttttcctttcttttcccttcctttcctttc 335
Query: 168 ----------------------ttcctttcctttcctttcctttcctttcctttcctttc 205
||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ctttcctttcctttcctttcctttcctttcctttcctttcctttcctttcctttcctttc 395
Query: 206 ctttcctttc----------ttttcttttcttttcttttcttcttgttttaaagaaacct 255
|||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctttcctttcctttcttttcttttcttttcttttcttttcttcttgttttaaagaaacct 455
Query: 256 ccagaatttttctccacagtagttgaattagcttaccatcccactagtaggcctaagggg 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ccagaatttttctccacagtagttgaattagcttaccatcccactagtaggcctaagggg 515
Query: 316 tctgtttttccttcatccacatcatcgtttgctgctgtttgtatttctgatcttgatcat 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tctgtttttccttcatccacatcatcgtttgctgctgtttgtatttctgatcttgatcat 575
Query: 376 tctgcctagggtcaaatgacatctcaaagaaactttaatccacacttccgtcatcattaa 435
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 576 tctgcctagggtcaaatgacatctcaaagaaactttaatccgcacttccgtcatcattaa 635
Query: 436 ggatgctgcatactttaaaaagactttaccagcttttgtgttccatgctttgaaacctgt 495
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ggacgctgcagactttaaaaagactttaccagcttttgtgttccatgctttgaaacctgt 695
Query: 496 ttttgttcttattttctgaggaatttttttgttctttgtaaatactagagattaatacca 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ttttgttcttattttctgaggaatttttttgttctttgtaaatactagagattaatacca 755
Query: 556 cgttatatgtgtatcttgcacaactttccagatttagagctttaagtggaatatggggaa 615
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 756 cgttatatgtgtatcttgcacaactttccagaattagagctttaagtggaatatggggaa 815
Query: 616 ttgggacagtggagaagaggttagattggaagtgagccaaacttaggatatatagaggct 675
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 ttgggatagtggagaagaggttagattggaagtgagccaaacttaggatatatagaggct 875
Query: 676 attttgaaatccagcagtatatacata 702
| |||||||||||||||||||||||||
Sbjct: 876 actttgaaatccagcagtatatacata 902
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1103
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1093
Effective search space: 757449
Effective search space used: 757449
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no481_n18.g1 MSMg01no481_n18.g1 CHROMAT_FILE:
MSMg01no481_n18.g1 PHD_FILE: MSMg01no481_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:38 2005
(582 letters)
>mm_chr2_43591675_43592655
Length = 981
Score = 1019 bits (527), Expect = 0.0
Identities = 569/583 (97%), Gaps = 3/583 (0%)
Strand = Plus / Minus
Query: 1 tcaataaaacagagaacagaagtggcagagatgtagaaggagattccctaattgtttgat 60
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 781 tcaataaaacagagaacag-agtggcagagatatagaaggagattccctaattgtttgat 723
Query: 61 tgggtaaataaagacagcagaaggtagtcactgggcaaagacaaagaggcaggttttctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tgggtaaataaagacagcagaaggtagtcactgggcaaagacaaagaggcaggttttctg 663
Query: 121 ggttccaggaggaagaggaagggatgatacagaaaagaggcttttaagccaggctgtgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ggttccaggaggaagaggaagggatgatacagaaaagaggcttttaagccaggctgtgga 603
Query: 181 gtgtacg-aaagggacaccgtgttggcctgggggctattagacccagtggtggcctctga 239
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gtgta-gaaaagggacaccgtgttggcctgggggctattagacccagtggtggcctctga 544
Query: 240 caccagaagaattccacatagaatagctgatgggtttaggacaatagatttcaagcttag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 caccagaagaattccacatagaatagctgatgggtttaggacaatagatttcaagcttag 484
Query: 300 caattgtgacatctggctgattttaaatattaagattgtctgatgtttttcattggaaat 359
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 483 caattgtgacatctggctgattttaaatattaagattgtttgatgtttttcattggaaat 424
Query: 360 gattcaggtgggcaaaagagagggcgtaacctctgggcagtcattattggttggttgact 419
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 423 gattcaggtgggcaaaagagaggacgtaacctctgggcagtcattattggttggttgact 364
Query: 420 gagccaactacctaggcagttggttggcggaactcaagcagtagctctaggcgttctcaa 479
||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 363 gagccaactacataggcagttggttggtggaactcaagtggtagctctaggcgttctcaa 304
Query: 480 gagggacggctgttctcagtgcatagctgagatctcaggaaagcggtagccagccttggg 539
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 303 gagggacggctgttctcagtgcatagctgagatctcaggaaagcgttagctagccttggg 244
Query: 540 agctacgtgagtcgctaaaggctgatggagctagctgggagat 582
|||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 243 agctacgtgagtcgctaaaggctggtggagctaactgggagat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 981
Length adjustment: 10
Effective length of query: 572
Effective length of database: 971
Effective search space: 555412
Effective search space used: 555412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
