Query= MSMg01no481_p14.b1 MSMg01no481_p14.b1 CHROMAT_FILE:
MSMg01no481_p14.b1 PHD_FILE: MSMg01no481_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:47 2005
(687 letters)
>mm_chr2_169396217_169397303
Length = 1087
Score = 1050 bits (543), Expect = 0.0
Identities = 576/591 (97%), Gaps = 8/591 (1%)
Strand = Plus / Minus
Query: 1 agaaacttgttaataaactaagagacatgtacaagggatatggtcaggggtgttcatatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 agaaacttgttaataaactaagagacatgtacaagggatatggtcaggggtgttcatatg 530
Query: 61 cttttatttatgataagagatggattctgaccccaagcaccaccggacagcagaccgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 cttttatttatgataagagatggattctgaccccaagcaccaccggacagcagaccgttt 470
Query: 121 aagtaaagttacagtggaattctgggtatctgtcaaagtgggtctgcagatgtttatcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aagtaaagttacagtggaattctgggtatctgtcaaagtgggtctgcagatgtttatcaa 410
Query: 181 cacagagagaagccatcacatgcaaaaagaaaaattatatattatggcatgttaggtttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 cacagagagaagccatcacatgcaaaaagaaaaattatatattatggcatgttaggtttc 350
Query: 241 aaatatgtatatatttcctcaagggaaaattccaggactttataatgaaaaaaagtatct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aaatatgtatatatttcctcaagggaaaattccaggactttataatgaaaaaaagtatct 290
Query: 301 aatttgtccctggacggaatcgtcatgattttctattcaccccc----acaacttctctg 356
|||||||||||||| ||||||||||||||||||||||||| ||||||||| ||
Sbjct: 289 aatttgtccctggatggaatcgtcatgattttctattcac----ttttacaacttctttg 234
Query: 357 acaattatgatcattaaaaatgggatccatagtggcctggagagaagggtaatggttagg 416
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 233 acaattatgatcattaaaaatgggatccatagtggcttggagagaagggtagtggttagg 174
Query: 417 agttgtttctcttccagaggacccagcttcagttcccagcaccttcacggtggctcacaa 476
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 173 agttgtttctcttccagaggacccagcttcagttcccagcaccttcatggtggctcacaa 114
Query: 477 ccatctgtaactccaaacccaggaggttccaacagactcttctaacttctgcaggcacca 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 ccatctgtaactccaaacccaggaggttccaacagactcttctaacttctgcaggcacca 54
Query: 537 gacacacgcacggtatacaccagtcacacacggtagacatacacacgtgta 587
||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 53 gacacacgcgcggtatacaccagtcacacacggtagacatacacatgtgta 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_p14.g1 MSMg01no481_p14.g1 CHROMAT_FILE:
MSMg01no481_p14.g1 PHD_FILE: MSMg01no481_p14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:47 2005
(653 letters)
>mm_chr2_169220336_169221388
Length = 1053
Score = 1166 bits (603), Expect = 0.0
Identities = 639/651 (98%)
Strand = Plus / Plus
Query: 3 tttgagcatggctgttgttgttttgaaatcagagcaatggtgtgtacccacaggagaccc 62
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 203 tttgagcatggctgttgttgttttgaaatcagagcaatggtgtgtagccacaggagaccc 262
Query: 63 tcacaaagttggaccaattccctgaggcaaagaggggtgggctcataatgctcacaagcc 122
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tcacaaagttggaccaatttcctgaggcaaagaggggtgggctcataatgctcacaagcc 322
Query: 123 cacttacttcccctgagactgtagaagtgggtaacagctgttggtggagggagcctcatt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cacttacttcccctgagactgtagaagtgggtaacagctgttggtggagggagcctcatt 382
Query: 183 agtccatagagtggctgcccaggtcacactagtgcctttaagtaatttcaatcagctcat 242
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 383 agtccatagagtggatgcccaggtcacacaagtgcctttaagtaatttcaatcagctcat 442
Query: 243 aggtttaccatagacttggccagaatcacctgctttgatctgttatttcccgctctatca 302
||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 443 aggttcaccatagacttggccagaatcacttgctttgatctgttatttccctctctatca 502
Query: 303 gaagcaaatagaagtagacaccccaggaaaagacacacaaccgacatggagctctctaca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaagcaaatagaagtagacaccccaggaaaagacacacaaccgacatggagctctctaca 562
Query: 363 gaggtgcgtttgtttatggtggaaatggtctccataattacggaagccgggaagttctat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gaggtgcgtttgtttatggtggaaatggtctccataattacggaagccgggaagttctat 622
Query: 423 tatctgccacttgcagcttcagaccccaggcatgctggtggtgcacttgtaggggatttt 482
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 623 catctgccacttgcagtttcagaccccaggcatgctggtggtgcacttgtaagggatttt 682
Query: 483 gaatgtggtgagtgcaagatgtgggtccttgagtccagaaatctggggttctgatctctg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gaatgtggtgagtgcaagatgtgggtccttgagtccagaaatctggggttctgatctctg 742
Query: 543 aaagccagagcatgggtagcatgtttgggagagagtgaatagtcgagcctcgagctgtta 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aaagccagagcatgggtagcatgtttgggagagagtgaatagtcgagcctcgagctgtta 802
Query: 603 tttgactgtgccctcggcggccttcttaacgctgactcacgttggccaaga 653
||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 803 tttgactgtgccctcggtggccttcctaacgctgactcacgttggccaaga 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
