Query= MSMg01no482_g04.b1 MSMg01no482_g04.b1 CHROMAT_FILE:
MSMg01no482_g04.b1 PHD_FILE: MSMg01no482_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:17 2005
(605 letters)
>mm_chr2_79530529_79531537
Length = 1009
Score = 1137 bits (588), Expect = 0.0
Identities = 602/609 (98%), Gaps = 4/609 (0%)
Strand = Plus / Plus
Query: 1 tatattttcagagatgtaaacaaagccatagatccaggatggggagccaggttcttctgg 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 tatattttcagagatgtaaacaaagccatagctccaggatggggagccaggttcttctgg 260
Query: 61 cttctcctctagtcatcagtttagtgcagcttgcctgcttgtggactccttctgtgagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttctcctctagtcatcagtttagtgcagcttgcctgcttgtggactccttctgtgagat 320
Query: 121 ctttttgtctatgtctatagacccatctgtacacacacataggtattttccccagggctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttttgtctatgtctatagacccatctgtacacacacataggtattttccccagggctg 380
Query: 181 tgcctcttctcaccatttctaagagttaaaggcatgagtctaaattgctaggatggttac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcctcttctcaccatttctaagagttaaaggcatgagtctaaattgctaggatggttac 440
Query: 241 tggtcagttctcaaatttgaatccaggccatcatgggaagggtgcttacaggaagccagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggtcagttctcaaatttgaatccaggccatcatgggaagggtgcttacaggaagccagc 500
Query: 301 ctcagcttaggtgaccatcaactttatgagccctttggtagcttatcact----ttacac 356
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 ctcagcttaggtgaccatcaactttatgagccctttggtagcttatcactccgtttacac 560
Query: 357 aacaacacaaacaatgcagatgttattgaggttgtgtttataaaatattcattgatgaaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacaacacaaacaatgcagatgttattgaggttgtgtttataaaatattcattgatgaaa 620
Query: 417 aggtatgaagcatgactcacaggaaatgccaaaagtgagataaactatcccacagcgttt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggtatgaagcatgactcacaggaaatgccaaaagtgagataaactatcccacagcgttt 680
Query: 477 cagctgttacctttcaacgtgatggaaacttgatatctaanaactcccttgacaagaacc 536
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 681 cagctgttacctttcaacgtgatggaaacttgatatctaaaaactcccttgacaagaacc 740
Query: 537 atgtttttatcagctgtgcctttctctgacatgttctttatattatttctcctgtatcat 596
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 741 atgtttttatcagctgtgcctttctctgaaatgttctttatattatttctcctgtatcat 800
Query: 597 gggttgaca 605
|||||||||
Sbjct: 801 gggttgaca 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1009
Length adjustment: 10
Effective length of query: 595
Effective length of database: 999
Effective search space: 594405
Effective search space used: 594405
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no482_g04.g1 MSMg01no482_g04.g1 CHROMAT_FILE:
MSMg01no482_g04.g1 PHD_FILE: MSMg01no482_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:17 2005
(537 letters)
>mm_chr2_79663210_79664150
Length = 941
Score = 953 bits (493), Expect = 0.0
Identities = 526/544 (96%), Gaps = 13/544 (2%)
Strand = Plus / Minus
Query: 1 ccctagaacccaggtaaagaaagtgagttattcatggtagtttgaacttatcatcccagg 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 705 ccctagaacccaggtaaagaaagtgagttattcatggtagcttgaacttatcatcccagg 646
Query: 61 ttgctaaattaagagagacagaccccttgggctcactaaccatccagtttagtctgtcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ttgctaaattaagagagacagaccccttgggctcactaaccatccagtttagtctgtcag 586
Query: 121 gccaaggaaaaatcctgtctcaagtaagcaaggtgacagacaatgttaaacttggcttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gccaaggaaaaatcctgtctcaagtaagcaaggtgacagacaatgttaaacttggcttct 526
Query: 181 atacatatgtgcatgtatgtgcacacaaccctccacacacacatgcatcaaacacacaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 atacatatgtgcatgtatgtgcacacaaccctccacacacacatgcatcaaacacacaca 466
Query: 241 c-------actttttattaactatgttttctatctcctccttcaaataattgaatcacac 293
| || ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 cacacacaac---ttacaaactatgttttctatctcctccttcaaataattgaatcacac 409
Query: 294 tttcccttttggaagacttaaatgtatgaaaggacatcctatttcaagaaagc---tttt 350
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 408 tttcccttttggaagacttaaatgtatgaaaggacatcctatttcaagaaagcttttttt 349
Query: 351 ttttttttaaataaaaatcaatgtacacgtagtctcttgcttttaaaccagttccatttt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ttttttttaaataaaaatcaatgtacacgtagtctcttgcttttaaaccagttccatttt 289
Query: 411 ttattatacagagcattcatcaaaccaggccttgtcacattgcttccgaggtagactaaa 470
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 288 ttattatacagagcattcatcaaaccagaccttgtcacattgcttccgaggtagactaaa 229
Query: 471 cactctatgaaaaaggaggtttatttcttgttcctttcttctcttgtagnctaataaatc 530
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 228 cactctatgaaaaaggaggtttatttcttgttcctttcttctcttgtagtctaataaatc 169
Query: 531 ttgc 534
||||
Sbjct: 168 ttgc 165
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 941
Length adjustment: 10
Effective length of query: 527
Effective length of database: 931
Effective search space: 490637
Effective search space used: 490637
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
