Query= MSMg01no482_j24.b1 MSMg01no482_j24.b1 CHROMAT_FILE:
MSMg01no482_j24.b1 PHD_FILE: MSMg01no482_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:34 2005
(670 letters)
>mm_chr2_139024914_139025983
Length = 1070
Score = 1261 bits (652), Expect = 0.0
Identities = 664/668 (99%), Gaps = 2/668 (0%)
Strand = Plus / Plus
Query: 4 ggaattctttcctgtccttcatgtgtgtacagaggccagcctgaagctaacttgtacaac 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttcctgtctttcatgtgtgtacagaggccagcctgaagctaacttgtacaac 263
Query: 64 ggacatatatcaaaggcatttttcaaaagagctagtctttccaagcaaatgagcttcctg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggacatatatcaaaggcatttttcaaaagagctagtctttccaagcaaatgagcttcctg 323
Query: 124 aatctgctgctaagatgataagcactttttcttatgtgacaaatataaagttaaggagag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatctgctgctaagatgataagcactttttcttatgtgacaaatataaagttaaggagag 383
Query: 184 ctgtcagcactgggtagaaagggcaactgtttgtgccatgtttccaggccctaggaaatg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgtcagcactgggtagaaagggcaactgtttgtgccatgtttccaggccctaggaaatg 443
Query: 244 cacataaggggggcaggcatgtgttttcatgaagccaaaagaaaaggaactgtcatcttt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cacataaggggggcaggcatgtgttttcatgaagccaaaagaaaaggaactgtcatcttt 503
Query: 304 tgcagtgcttcatgtattaaacatgcgaaagttgtggccacttggatacgtttatgtagg 363
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 504 tgcagtgcttcatgtattaaacatgcaaaagttgtggccacttggatacgtttatgtagg 563
Query: 364 aaaaataccaatgtctttattacatatatatgcatatacatctacagatgctcaaccata 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaaaataccaatgtctttattacatatatatgcatatacatctacagatgctcaaccata 623
Query: 424 caatggtactacttacaacttagctgtaagttgtaattcagttcaaaata-tgtttggct 482
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 624 caatggtactacttacaacttagctgtaagttgtaattcagttcaaaa-agtgtttggct 682
Query: 483 gaaggtattccttaatattacaaaatatgcctgagaacatcatgaattcaatactcattg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gaaggtattccttaatattacaaaatatgcctgagaacatcatgaattcaatactcattg 742
Query: 543 tcaaattgtaatgaatttttttatctaaagtttcatctatatcataagtgaatgtctttt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tcaaattgtaatgaatttttttatctaaagtttcatctatatcataagtgaatgtctttt 802
Query: 603 ttacctacacatttttgggcttcatatagtgtcctttaaataatgatatataaatctaaa 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ttacctacacatttttgggcttcatatagtgtcctttaaataatgatatataaatctaaa 862
Query: 663 tgtaagat 670
||||||||
Sbjct: 863 tgtaagat 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no482_j24.g1 MSMg01no482_j24.g1 CHROMAT_FILE:
MSMg01no482_j24.g1 PHD_FILE: MSMg01no482_j24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:34 2005
(636 letters)
>mm_chr2_139048147_139049182
Length = 1036
Score = 930 bits (481), Expect = 0.0
Identities = 538/579 (92%), Gaps = 35/579 (6%)
Strand = Plus / Minus
Query: 92 ggatgccctccctgagaactcaggcttgatttcctgtactcacatgacagatgacaataa 151
||||| |||||||||||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct: 1036 ggatg-cctccctgagaactcaggcttgattttctgcactcacatgacagatggcaataa 978
Query: 152 tatgcaatcccaaagggtatacaacaccttctctggcctctacagatactgcatgaacac 211
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977 tatgcaaccccaaaggttatacaacaccttctctggcctctacagatactgcatgaacac 918
Query: 212 agtgcacagatgtgcagtcaggaaacacacacacacacacacacac-------------- 257
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 agtgcacagatgtgcagtcaggaaacacacacacacacacacacacacacacacacacac 858
Query: 258 --------------------aagattaaacacatcttaaaaagaaattgttgaggaaaca 297
||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 acacacacacacacacacataagattaaacacatcttaaaaagaaattgttgaggaaaca 798
Query: 298 ggatggacagaatatggaaaacacatcagtagtattaaagagaatactgctgatatatta 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ggatggacagaatatggaaaacacatcagtagtattaaagagaatactgctgatatatta 738
Query: 358 ttcttttagtttatttgctttttgatgaattttaaggggtggatactcttgaagataacc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ttcttttagtttatttgctttttgatgaattttaaggggtggatactcttgaagataacc 678
Query: 418 aatttctcatagctatctgacctagagtagtttttatgacactatggttaatgtgagtgc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aatttctcatagctatctgacctagagtagtttttatgacactatggttaatgtgagtgc 618
Query: 478 atactgccattttcaagctgacgtcaggataatcttctgagtcacacaagtcaattatta 537
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 617 atactgccattttcaagctgacatcaggataatcttctgagtcacacaagtcaattatta 558
Query: 538 tgaggcttccacatagtgtgctctgatgactgaaaaatagtcattacagtatcagaatca 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tgaggcttccacatagtgtgctctgatgactgaaaaatagtcattacagtatcagaatca 498
Query: 598 actcattcatgctgtcatttctataagtaattattgaac 636
|||||||||||||||||||||||||||||||||||||||
Sbjct: 497 actcattcatgctgtcatttctataagtaattattgaac 459
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
