BAC Information

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BAC

Clone NameMSMg01-482L07
Chromosome2 (Build37)
Map Location 58,448,165 - 58,448,503
singlet/doubletsinglet
Overlap genenone
Upstream geneGalnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c, LOC667062, Acvr1
Downstream geneLOC674940, Upp2, BC062650, Pkp4, LOC625354, 2310032F03Rik, LOC100038999
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482L07.T7 (MSMg01no482_l07.b1)MSMg01-482L07.TJ (MSMg01no482_l07.g1)
ACCAG562807AG562808
length867752
length of high quality
(start - end)
---352 (76 - 427)
definitionCHROMAT_FILE: MSMg01no482_l07.b1 PHD_FILE: MSMg01no482_l07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:40 2005CHROMAT_FILE: MSMg01no482_l07.g1 PHD_FILE: MSMg01no482_l07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCACCCTCTAATAATTGCGGCCGCCAAAAGAACCCCTATTCGTCACCCGC
CGGGNGGAANNNCCGNTTTGCTACTACCGCGGGGGGNNNAANCNNNANGG
AAGGAGGAACAGAGCTAGATCCGCTAATTGAACGCAAGACCTGCCCCAAG
AGGACATGCGAGAGTGGCAGAGACAAACTATCTATGGAAGGGAGGGGGTG
GACCTCTACCAGAAACAAACGCGAGCATGTTTGCCAGTACAACTGCAAGG
CACTTGAGGAAGTGACCGGCAACAGCACGCCCAATTTTTTAGAGAAATAG
TTAGCGCTTATATATCATCGCCTGTAGTGATGTATGTTGTCAGAAAGTGC
ACGCGACGAGGCGAGTTTTTTTTTTTTTCACAGCGCGCGAAGACAGGAAA
CACACAAGCCAAAGAGCCTTTTATAGGCGCTATACAACAACCGGAAAAGA
GAGCCACGGGCCCTAAATTGACATAATATTTCGCGCACCACCCACAGGGG
ACAGACACCGTTACCGCACGTCCTCCACCTAGCGCACCCGGAGTTGCATT
TCCGAGCCTGACCAGCCTCCCGCATTGTACCTGCACCGCACAGTCTCCCT
TGATGAAGGGGTTGACTTAGAAGTGCACCTATTCTCTATAACCCAAGGGC
AATCGCGAACGTCGGCGTCTGAAACCCGTCATACATTCCGCGGGGCGACA
ATGGATCTAATAGAACCCGCACCCGACTCGACGGGATATGCGGAGGGACC
CCATGCTGAAGCCATTTGTGTTTCAGCTACCAACACGAGATGTCAGAATC
CTGGGAACTGCCAAGTTTTGTATTAAGATCTAAACGGCGGAGGGAGAACC
ACTTGCGCTCCCACCCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAACAAAGCTGATAGGCATAAAGG
ACTTCAATGGTGTTTGGAGTGTTTTGTTTTGTGTTCTGAGCAGTGGATAC
ACAAGTGTGGTATTATTTTCTACAGCTCATTGTTGTTTTGTTTCTGGAGG
CAGGGGCTCAAACTCCTGATCCTTCTGCCTGAGCCTCCTGAGGGCTAGGG
TTACGCATACACATCCGGTTTCCTATGTCCCCTTTTCTGCCTGAAAGATT
TCATCTAAAAAAAAAAATTTACAACCAAGATTCCTACCATTTTGCCTTTC
AAGAATCTGTTCTTTGTAACTCAATTCGTTGCTGTGAGTGAGTGGGGTGT
AGAGGAAGGATCTGCCTCCCCCCCGCTAAGGAGAATGTACAAGATCTCAG
GTCCCTGGGCGCACGTTGTCTTTGCAGGCCTGGCTGGGGGTGTCTTTCTT
CTCTCTCCCTTGTTCTGATCCGTGTTTGCCAGTTTCCCTTTTGCTTTTGG
GAGCTCAGTTGTATCCTACAATTTGCTAGTGCCTGGGTGGCACTGTGCTG
TGGGTGTAAGGCGTATCCACTGTCCCCTTTTATATTGTTTTGTTCCCAAG
TCTACTTTGCCCTTTCTTATTACACTTTTGCTTTTTATACGAATTCTTTC
CTTCTCTTCTGATATAACATACTACTACCTCTTCTTTTTGTTTCTTTAAA
CG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_l07.g1 MSMg01no482_l07.g1 CHROMAT_FILE:
MSMg01no482_l07.g1 PHD_FILE: MSMg01no482_l07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:40 2005
         (352 letters)



>mm_chr2_58447965_58448711
          Length = 747

 Score =  600 bits (310), Expect = e-176
 Identities = 333/344 (96%), Gaps = 7/344 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaacaaagctgataggcataaaggacttcaatggtgtttggagtgttttgttttgtgtt 60
           |||||||||||||||||| |||||||||||||||||||||||||     ||||| |||||
Sbjct: 201 tcaacaaagctgataggcgtaaaggacttcaatggtgtttggag-----tgtttcgtgtt 255

                                                                       
Query: 61  ctgagcagtggatacacaagtgtggtattattttctacagctcattgttgttttgtttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ctgagcagtggatacacaagtgtggtattattttctacagctcattgttgttttgtttct 315

                                                                       
Query: 121 ggaggcaggggctcaaactcctgatccttctgcctgagcctcctgagggctagggttacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ggaggcaggggctcaaactcctgatccttctgcctgagcctcctgagggctagggttacg 375

                                                                       
Query: 181 catacacatccggtttcctatgtccccttttctgcctgaaagatttcatctaaaaaaaa- 239
           |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| 
Sbjct: 376 catacacatccggtttcctatgtcccctcttccgcctgaaagatttcatctaaaaaaaag 435

                                                                       
Query: 240 -aaatttacaaccaagattcctaccattttgcctttcaagaatctgttctttgtaactca 298
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aaaatttacaaccaagattcctaccattttgcctttcaagaatctgttctttgtaactca 495

                                                       
Query: 299 attcgttgctgtgagtgagtggggtgtagaggaaggatctgcct 342
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 attcgttgctgtgagtgagtggggtgtagaggaaggatctgcct 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 747
Length adjustment: 9
Effective length of query: 343
Effective length of database: 738
Effective search space:   253134
Effective search space used:   253134
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)