NACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGC
GGAATTCCCTAATTTTCAGACACAGGCGAACAGAATAGGTTTGAAAGCTT
GGTTTATTGAAACACACCTCAGCAACAAAGACAGATATTGCTTTGGAGTA
AAGGGCTGAAATTTTTGAAATTTTTTCCAAGCAAATAAACCCAAGAAGCA
AGTGGGAATATCCATTCTAATATTTAATAAATAGACATTGAATCAATTAA
TCAAATGAGATGGGGAGGAAAATTTCATATTCATCAAAGGAAAAATCTAC
CCAATGTGATGCCTGAATTCTAAATTTCTATGCCCAAAATAGAAAGGCAC
ACGCATTCATAAAAGAAACATTATTAAAGCTTAAATCACACATTGAAACA
CACACATTAACAATGCCACACTNCACATCCCACTCTCACTAATGGACAGC
TAATCCAGACAGAAACTGAAGAGAAAATAGTAAAAGTAATAGACATTATG
AATCAAATGGGACTTACAGATATCTACAGAACTTTTAAACCCATACCTGA
AAAAAAGAAAAATACCCCTTTTTTTTCCGCCACCCCCCAAAAAGATCCTT
CTCCCAAAAAATTGGAGAAACATATTTGTTGGCCCCCCCAAAAAAAAGGG
GTTCCCCCCCCCCAAGTGGTGTTTTTTCCCCAACAAAATAGGGGGGAGAA
CNCTCTCGGCCGGGGTGTTTTTTTTTCACCAAAAAAAACNCNAAANNGAA
GTNNNNNATATTNAGTNNNTGTTTTTGTTTTGTT

CCGATGAAGNTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTCTGGTGAATTGAATATTATGCA
TTTTCAACTGATGTTATAGAGTACATGGATTTCTATTTTTTAAATGTTCT
CCAATTTCACAAATCTTTATTGTCTTCCTTTCTGGGTTCTAACCTTTCTG
CCACTACTGTATTCATTATTTCTATTTTTCTCCAGCACAGCCCATAATGT
AAAGTCAGTGAATTTTTAATTAAATCTTGTGTGAAACAGATAGCCACATC
TAAGACAGAGAAAGGGGAAGAAATGTTAGTAAAGTTTGAAGAGTAGTTCA
TGGTAGTTGAAGTAGACATTTTGTTGGCATTTGGAGATTTTGAGAATTAC
ATTTTAAATACTTGGAGCCGTTTTAAAGCAGCTGTACCATTCTTGGAGGC
CATCTATAATAACTGCAGCCTCTGCTGTGAGGGCCATCCAGAGCTAGCAG
AAGAAAACCTTAGGGAAGATGCTTCTATGAAATAAATTGGAAAGCTGCTT
CTGTAAGATTCTGAGGCAAAAAAAAATCCATCACTCCCATTGAACATGTA
AGTCAGTGGGATATGTCAGTTAAATTGATTGTTCCAGTGAGAAAACTGAA
TGTTTCTCACAACAGTTACGTCAGCTGGAATGTGACTGACAATATTCACA
GGACAGATGCTGTAAGTGAAGTGGGGAAAAGAACAATTATACGGATGGTT
CAGATTTGTAAGTGGTTTGTTTGN

Query= MSMg01no483_l22.g1 MSMg01no483_l22.g1 CHROMAT_FILE:
MSMg01no483_l22.g1 PHD_FILE: MSMg01no483_l22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:04 2005
         (625 letters)



>mm_chr2_40047663_40048688
          Length = 1026

 Score = 1172 bits (606), Expect = 0.0
 Identities = 621/626 (99%), Gaps = 1/626 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctggtgaattgaatattatgcattttcaactgatgttatagagtacatggatttcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 attctggtgaattgaatattatgcattttcaactgatgttatagagtacatggatttcta 767

                                                                       
Query: 61  ttttttaaatgttctccaatttcacaaatctttattgtcttcctttctgggttctaacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 ttttttaaatgttctccaatttcacaaatctttattgtcttcctttctgggttctaacct 707

                                                                       
Query: 121 ttctgccactactgtattcattatttctatttttctccagcacagcccataatgtaaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ttctgccactactgtattcattatttctatttttctccagcacagcccataatgtaaagt 647

                                                                       
Query: 181 cagtgaatttttaattaaatcttgtgtgaaacagatagccacatctaagacagagaaagg 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 646 cagtgaatttttaattaaatcttgtgtgaaacagttagccacatctaagacagagaaagg 587

                                                                       
Query: 241 ggaagaaatgttagtaaagtttgaagagtagttcatggtagttgaagtagacattttgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ggaagaaatgttagtaaagtttgaagagtagttcatggtagttgaagtagacattttgtt 527

                                                                       
Query: 301 ggcatttggagattttgagaattacattttaaatacttggagccgttttaaagcagctgt 360
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 526 ggcatttggagattttgagaattacattttaaatacttggagttgttttaaagcagctgt 467

                                                                       
Query: 361 accattcttggaggccatctataataactgcagcctctgctgtgagggccatccagagct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 466 accattcttggaggccatctataataactgcagcctctgctgtgagggccacccagagct 407

                                                                       
Query: 421 agcagaagaaaaccttagggaagatgcttctatgaaataaattggaaagctgcttctgta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 agcagaagaaaaccttagggaagatgcttctatgaaataaattggaaagctgcttctgta 347

                                                                       
Query: 481 agattctgaggc-aaaaaaaaatccatcactcccattgaacatgtaagtcagtgggatat 539
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 agattctgaggcaaaaaaaaaatccatcactcccattgaacatgtaagtcagtgggatat 287

                                                                       
Query: 540 gtcagttaaattgattgttccagtgagaaaactgaatgtttctcacaacagttacgtcag 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gtcagttaaattgattgttccagtgagaaaactgaatgtttctcacaacagttacgtcag 227

                                     
Query: 600 ctggaatgtgactgacaatattcaca 625
           ||||||||||||||||||||||||||
Sbjct: 226 ctggaatgtgactgacaatattcaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1026
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1016
Effective search space:   624840
Effective search space used:   624840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)