Query= MSMg01no483_m04.b1 MSMg01no483_m04.b1 CHROMAT_FILE:
MSMg01no483_m04.b1 PHD_FILE: MSMg01no483_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:05 2005
(661 letters)
>mm_chr2_41156614_41157674
Length = 1061
Score = 1208 bits (625), Expect = 0.0
Identities = 650/659 (98%), Gaps = 3/659 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaaa--tttctttaaacctactagaagacaatccttcctgatgaagtagtaaat 62
|||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcaaaacatat-tttaaacctactagaagacaatccttcctgatgaagtagtaaat 262
Query: 63 ttagtatctcttctccagggaagctgttttccctttaaaggagtgtctacactggagaaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttagtatctcttctccagggaagctgttttccctttaaaggagtgtctacactggagaaa 322
Query: 123 ggaaaatggcatcctgatctactggtctttaagtccttagaataaaacacggcagcaaca 182
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 323 ggaaaatggcatcccgatctactggtctttaagtccttggaataaaacacggcagcaaca 382
Query: 183 aaatatgtgtaggaaactctacaaaatcaaagatggcagacagcttttcccctctgcatc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaatatgtgtaggaaactctacaaaatcaaagatggcagacagcttttcccctctgcatc 442
Query: 243 ccactcagcttgccctaggctcacacagacttataattcttgaactttgaatttaagtta 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ccactcagcttgccctaggctcacacagacttataattcttgaactttgaatttaagtta 502
Query: 303 tagagccaaaaataaccctttaaaaaatgttttgcagactttacaaagcctttgatctac 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tagagccaaaaataaccctttaaaaaatgttttgcagactttacaaagcctttgatctac 562
Query: 363 aagctccttaccagagaaataaataattcactggaatttagtggtattctctcctgttgc 422
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 563 aagctccttaccagagaaataaataattcacgggaatttagtggtattctctcctgttgc 622
Query: 423 ctgaatatttctttcccccatagaatctcttatattccaaagataaagatcttagaggtc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctgaatatttctttcccccatagaatctcttatattccaaagataaagatcttagaggtc 682
Query: 483 acacatttgctttctccagagaacaaatgagtgagcaggaattagaactcattacttcta 542
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 683 acacatttgctttctccagagaacaaatgagtgagcaggaactagaactcattacttcta 742
Query: 543 agtctggtgtttttcttctgctgcttaagaaaaatgagcacacaggggataaggcaggca 602
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 743 agtctggtgtttttcttctgctgcttaagaaaaatgagcacacaggggacaaggcaggca 802
Query: 603 acagcctgagtcactcaacatttaacattgttttccagaatcaggtctttttcctctca 661
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 acagcctgagtcactcaacatttaacattgttttccagaatcaggtctttttcctctca 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_m04.g1 MSMg01no483_m04.g1 CHROMAT_FILE:
MSMg01no483_m04.g1 PHD_FILE: MSMg01no483_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:05 2005
(635 letters)
>mm_chr2_41284740_41285774
Length = 1035
Score = 1174 bits (607), Expect = 0.0
Identities = 626/635 (98%), Gaps = 5/635 (0%)
Strand = Plus / Minus
Query: 1 agtaaatctttgttttcagtctaggtagggaaacaaactaccaaatgttcttagatgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 agtaaatctttgttttcagtctaggtagggaaacaaactaccaaatgttcttagatgtgt 904
Query: 61 ttgaaccatcactcattcaacaaagtgcccactcaatatgacattatttttttattttta 120
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 903 ttgaaccatcactcattcaacaaagtgcccactcaatatgacatta-----ttattatta 849
Query: 121 tttttttttttttggttataactacttcattgaatacctaattccattctgcagcaggtg 180
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 848 ttattttttttttggttataactacttcattgaatacctaagtccattctgcagcaggtg 789
Query: 181 aggagctgagactagatagtgaaaagcaattatgaaaaacagctatcgaggcttcggtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 aggagctgagactagatagtgaaaagcaattatgaaaaacagctatcgaggcttcggtct 729
Query: 241 aattctgtcctttctattgccctgcataagactcagcatcatgcacagtatttggtacag 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 aattctatcctttctattgccctgcataagactcagcatcatgcacagtatttggtacag 669
Query: 301 tgaacaccccagactatttcacacctacccttcccaaaagattcctatccagtagatttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tgaacaccccagactatttcacacctacccttcccaaaagattcctatccagtagatttg 609
Query: 361 ggagaaactcaaataccagttttggtgggggaaggcagttcctgtgatgattaccctgaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ggagaaactcaaataccagttttggtgggggaaggcagttcctgtgatgattaccctgaa 549
Query: 421 gaaatagagtgaggtctgattttcgtgtgccgtacagattcaatttgttaaaattgaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gaaatagagtgaggtctgattttcgtgtgccgtacagattcaatttgttaaaattgaaaa 489
Query: 481 agcctgtatatctacacacaaaaaaatcagcacaaatatgatggcttgtctctacagaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 agcctgtatatctacacacaaaaaaatcagcacaaatatgatggcttgtctctacagaga 429
Query: 541 ttaatagtcattcatagttggatggttgtggtggaacagcaggtttttgtcagcactctc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttaatagtcattcatagttggatggttgtggtggaacagcaggtttttgtcagcactctc 369
Query: 601 acactgaaattgcctttcaatctccaggggctacc 635
|||||||||||||||||||||||||||||||||||
Sbjct: 368 acactgaaattgcctttcaatctccaggggctacc 334
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
