Query= MSMg01no483_m24.b1 MSMg01no483_m24.b1 CHROMAT_FILE:
MSMg01no483_m24.b1 PHD_FILE: MSMg01no483_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:09 2005
(508 letters)
>mm_chr2_118149043_118149950
Length = 908
Score = 855 bits (442), Expect = 0.0
Identities = 492/514 (95%), Gaps = 13/514 (2%)
Strand = Plus / Plus
Query: 4 gaattcatt---attccgactatgattttttt-----tataaagcagaacatgggttccc 55
||||||||| || ||||||||||||||| |||||||||||||||||||||||
Sbjct: 199 gaattcattaacat---gactatgatttttttatatatataaagcagaacatgggttccc 255
Query: 56 agaacacagaaatatacacagatttttttttgaaacagaatgtcaaggctctggggtttg 115
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 256 agaacacagaaatatatacagattttattttgaaacagaatgtcaaggctctggggtttg 315
Query: 116 atccccaacatgacacagaaacagacctcagagctcatgacacgtgcttcagctacaggt 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 atccccaacatgacacagaaacagacctcagagctcatgacacgtgcttcagctacaggt 375
Query: 176 gagagaagctggcaggtgagagaagctggcttaggctagcttgctgatacaggatggggt 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gagagaagctggcaggtgagagaagctggcttaggctagcttgctgatacaggatggggt 435
Query: 236 cattaatgtggccgattgcatttttctacattctactgtcttacaactttcccaatgctg 295
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 436 cattaatgtggccgattgcatttttctactttctactgtcttacaactttcccaatgctg 495
Query: 296 atgccaggcctgaacaatgaaacacaagttccagatcattgtttcagggcagggcacctt 355
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 496 atgccaggcttgaacaatgaaacacaagttccagatcattgttccagggcagggcacttt 555
Query: 356 ggagtacccagcattcggcaccatttggaaaacaagtactgggaagtatcgggtagaatg 415
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 556 ggagtacccagcatccggcaccatttggaaaacaagtactgggaagtattgggtagaatg 615
Query: 416 gctaaaggaattcactcctataaccctgaaggggagagactctcccagggatgttaagac 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gctaaaggaattcactcctataaccctgaaggggagagactctcccagggatgttaagac 675
Query: 476 agatctggctatggccagtctgttt-accgtgga 508
|||||||||||||||||||| ||| ||||||||
Sbjct: 676 agatctggctatggccagtcc-tttcaccgtgga 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_m24.g1 MSMg01no483_m24.g1 CHROMAT_FILE:
MSMg01no483_m24.g1 PHD_FILE: MSMg01no483_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:09 2005
(571 letters)
>mm_chr2_118290813_118291783
Length = 971
Score = 837 bits (433), Expect = 0.0
Identities = 433/433 (100%)
Strand = Plus / Minus
Query: 139 cacacacacacacacacacacacacacacacacacacacacacacacacacacagcattt 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971 cacacacacacacacacacacacacacacacacacacacacacacacacacacagcattt 912
Query: 199 taggaaagcaaaggaataaaaaaacatcagctagaacaaagcagaattaagctgtgtatt 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 taggaaagcaaaggaataaaaaaacatcagctagaacaaagcagaattaagctgtgtatt 852
Query: 259 tggttcttgcctataatcctagcacccaggaggaggctaaggcaggaggatgggctacag 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 tggttcttgcctataatcctagcacccaggaggaggctaaggcaggaggatgggctacag 792
Query: 319 tgagatcctgtctcacaaaacagaaactgaacacccggaaactgaacacccgaacacttc 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tgagatcctgtctcacaaaacagaaactgaacacccggaaactgaacacccgaacacttc 732
Query: 379 tctaagaacatatgaagcaagcaaattgatgcctttttagttacatgattaaaaacttga 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tctaagaacatatgaagcaagcaaattgatgcctttttagttacatgattaaaaacttga 672
Query: 439 caacagtttttatatgaacacacagagctgcagaaagctcatggtgggagagttggcctg 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 caacagtttttatatgaacacacagagctgcagaaagctcatggtgggagagttggcctg 612
Query: 499 tgggttccagtcattgcagagccctggggtgccattagtgtagctaatgtacaagcatcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tgggttccagtcattgcagagccctggggtgccattagtgtagctaatgtacaagcatcc 552
Query: 559 cccatgcctgata 571
|||||||||||||
Sbjct: 551 cccatgcctgata 539
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 87
Number of extensions: 38
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
