Query= MSMg01no483_n14.b1 MSMg01no483_n14.b1 CHROMAT_FILE:
MSMg01no483_n14.b1 PHD_FILE: MSMg01no483_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:12 2005
(607 letters)
>mm_chr2_100451440_100452446
Length = 1007
Score = 1089 bits (563), Expect = 0.0
Identities = 594/605 (98%), Gaps = 3/605 (0%)
Strand = Plus / Minus
Query: 5 gaattctttc--tttcgttgaaataaatactttggtggataatttaaatggaaagattta 62
|||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 gaattctttcgatat-gttgaaataaatactttggtggataatttaaatggaaagattta 764
Query: 63 ttttagtttaatttaactttgtttttatttttacattgccatcaaaaaatcatagtattt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 ttttagtttaatttaactttgtttttatttttacattgccatcaaaaaatcatagtattt 704
Query: 123 aattttgtttcttgagttaggaattgtatcaccaaatgctactttatgtgtttaagctat 182
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 703 aattttgtttcttgagttaggaattgtatcaccaaatgctactttatatgtttaagctat 644
Query: 183 tattggttcaaaattccatgatttttgctcagttatagtgttgttaagtgtaacaagaga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tattggttcaaaattccatgatttttgctcagttatagtgttgttaagtgtaacaagaga 584
Query: 243 atgttattctcatttatttttttcatctcgaataagtaaattttagagcaagttatgacc 302
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 atgctattctcatttatttttttcatctcgaataagtaaattttagagcaagttatgacc 524
Query: 303 ccaggcaacaaagacatctctcatagtgtacatacaggatgcaagcccacgtgggagaaa 362
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ccaggcaacaaagtcatctctcatagtgtacatacaggatgcaagcccacgtgggagaaa 464
Query: 363 tgaactcaaatccacattggagatgtttttgaaaacttaactctttgcagtatactcctt 422
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 463 tgaagtcaaatccacattggagatgtttttgaaaacttaaatctttgcagtatactcctt 404
Query: 423 caagtttttgagcaaatgctagaggaattgatatgaagagatagcttaactattcctatg 482
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 caagttttcgagcaaatgctagaggaattgatatgaagagatagcttaactattcctatg 344
Query: 483 atcaagtttaaaatatagtagtattattctacatttgttcatttggtactttgcttaata 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 343 atcaagtttaaaatatagtagtattattctacatttgttcatttggtactttgcttagta 284
Query: 543 gcataccccacagaaatagtatatgtacatttatataacttttaaccctacacatatatg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gcataccccacagaaatagtatatgtacatttatataacttttaaccctacacatatatg 224
Query: 603 tgtgt 607
|||||
Sbjct: 223 tgtgt 219
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_n14.g1 MSMg01no483_n14.g1 CHROMAT_FILE:
MSMg01no483_n14.g1 PHD_FILE: MSMg01no483_n14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:12 2005
(499 letters)
>mm_chr2_100471355_100472256
Length = 902
Score = 926 bits (479), Expect = 0.0
Identities = 496/503 (98%), Gaps = 5/503 (0%)
Strand = Plus / Plus
Query: 1 tagaattctaagcaatgaagtttcttttcta-ggtttttttt---gggggggggacaaaa 56
||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||
Sbjct: 201 tagaattctaagcaatgaagtttcttttctagggttttttttgggggggggggggcaaaa 260
Query: 57 gagaactcaagtaggtaggtttaagctaaaagtgagttcaaaatggctctttattgaata 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagaactcaagtaggtaggtttaagctaaaagtgagttcaaaatggctctttattgaata 320
Query: 117 aatttgggggaaatcatttttctctacttcttaactcacacctcaggaagaggattgatg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatttgggggaaatcatttttctctacttcttaactcacacctcaggaagaggattgatg 380
Query: 177 aagagaagtctcttgacatttctatctgcagcttgtaaaacttggtagagaaaactcaaa 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagagaagtctcttgacatttctatctgcagcttgtaaaacttggtagagaaaactcaaa 440
Query: 237 gctatctcctaatcaattaattcatctttatatgtaatctgaaatcttgtatcatttata 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctatctcctaatcaattaattcatctttatatgtaatctgaaatcttgtatcatttata 500
Query: 297 aataccaagtagttatagtatataaattgatatgtttataccaactttaagtgcattact 356
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 501 aataccaagtagttatagtatataaattgatatgtttatacaaa-tttaagtgcattact 559
Query: 357 tgtgtcaccagaaatcactcaataaaagttaatttcagttaaaagatttcagaatgccat 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgtgtcaccagaaatcactcaataaaagttaatttcagttaaaagatttcagaatgccat 619
Query: 417 gcttaataatctagttggctgcagtcaccttttaatttagggaactcactgtacagtgag 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gcttaataatctagttggctgcagtcaccttttaatttagggaactcactgtacagtgag 679
Query: 477 tttaaagattacaatccttcctg 499
|||||||||||||||||||||||
Sbjct: 680 tttaaagattacaatccttcctg 702
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 902
Length adjustment: 10
Effective length of query: 489
Effective length of database: 892
Effective search space: 436188
Effective search space used: 436188
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
