CCCTTTNNTTTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCAAGGTTCCTACCTAAACATGATAAAAGCAATCTA
CAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAA
TCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTT
TTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGA
GATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTG
CAGATGATATGATAGTATATATAAGTGACCCTAAAAATGCTACCAGAGAA
CTCCTAAACCTGATAAGCAGCTTCGGTGAAGTAGCTGGATATAAAATAAA
CTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGA
AAGAAATTAGGGAAACAACACCATTCTCAATAGTCACAAATAATATAAAA
TATCTTGGCGTAACTCTAACTAAGGAGGTGAAAGATCTGTATGATAAAAA
CTTCAAATCTTTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAG
ATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATC
TTGCCTAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAAC
TCAATTCTTCAACGAATTAGAAGGAGCAATTTGCNAATT

NNNCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTCAGAAATTCTGTTTGTGGACGAGGCTGTGTGA
GCGAGGGATCTGGATTACAGACTCCCCCAGGTTGAACTTCGAACGTACAC
ACACACACGCACACACACACGCACACACACACACACACACGAGTCTGTGG
CTCTTTGGAAAATTTAAGTTTTGCACATGCTTGACTTAAGTTTCTTTTTT
TTTTTCTTTCTTGATATGTCATGATTGCCTTTTATATTACAATAGCTTTA
CAATCCCTTTGTTGATATGTAGTCTCTTATGGGGTGTGTATTTATGTATT
TGGTGGTGGTGTAGGACTTGGATAATTTTGTAAAGTTAAAACAGAAGAGC
AGTGTTTCCGGAGTGGAGAACACCGCTAGCAACATTAAATGGAAAGTCGG
TGGATAGTCTGGAGATGAGGTCCACAGACAGCTGTCTGGATTCCAAGAAA
GGAATTAGGAGTTTAGGATTAAGACATTTACCCTTTGTCACACTCATCCC
TTCTCACCTTGTTCGCTGTGATGTGATGTAACCTCCGGCTTCCTATCTGC
TTTACCAGCAGGGACCTAGGAGGACATGTGGCCTTCATAGCCTGTCCCAA
TGACTTTTTTTTTTTCTTGCTCTCACCAAGCCTAACCTTTGTCTGGTTAG
GAATTTTCTCACCCCCAGTCTTTGTTGAAATATTAAAA

Query= MSMg01no484_a12.g1 MSMg01no484_a12.g1 CHROMAT_FILE:
MSMg01no484_a12.g1 PHD_FILE: MSMg01no484_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:27 2005
         (429 letters)



>mm_chr2_52274799_52275627
          Length = 829

 Score =  700 bits (362), Expect = 0.0
 Identities = 416/436 (95%), Gaps = 8/436 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtttgtggacgaggctgtgtgagcgagggatctggattacagactcccccaggttgaa 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ctgtttgtggacaaggctgtgtgagcgagggatctggattacagactcccccaggttgaa 690

                                                                       
Query: 61  cttcgaacgtaca--caca--cacacgcaca--cacacacgcacacacacacacacacac 114
           |||||||||||||  ||||  |||| |||||  ||||||| |||||||||||||||||| 
Sbjct: 689 cttcgaacgtacacgcacacgcacaggcacacgcacacacacacacacacacacacacat 630

                                                                       
Query: 115 gagtctgtggctctttggaaaatttaagttttgcacatgcttgacttaagtttctttttt 174
           |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 629 gagtctgtggctctttggaaaatttaagttttgcacgtgcttgacttcagtttctttttt 570

                                                                       
Query: 175 tt-tttctttcttgatatgtcatgattgccttttatattacaatagctttacaatccctt 233
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttctttctttcttgatatgtcatgattgccttttatattacaatagctttacaatccctt 510

                                                                       
Query: 234 tgttgatatgtagtctcttatggggtgtgtatttatgtatttggtggtggtgtaggactt 293
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tgttgatatgtagtctcagatggggtgtgtatttatgtatttggtggtggtgtaggactt 450

                                                                       
Query: 294 ggataattttgtaaagttaaaacagaagagcagtgtttccggagtggagaacaccgctag 353
           |||||||||||||||||| ||||||||||||||||| |||||||||||||| |  |||||
Sbjct: 449 ggataattttgtaaagtt-aaacagaagagcagtgtctccggagtggagaatagtgctag 391

                                                                       
Query: 354 caacattaaatggaaagtcggtggatagtctggagatgaggtccacagacagctgtctgg 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 caacattaaatggaaagtcggtggatagtctggagatgaggtccacagacagctgtctgg 331

                           
Query: 414 attccaagaaaggaat 429
           ||||||||||||||||
Sbjct: 330 attccaagaaaggaat 315


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)