BAC Information

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BAC

Clone NameMSMg01-485L01
Chromosome2 (Build37)
Map Location 43,273,004 - 43,273,270
singlet/doubletsinglet
Overlap genenone
Upstream geneLrp1b, LOC100041228
Downstream geneLOC100041245, Kynu, Arhgap15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485L01.T7 (MSMg01no485_l01.b1)MSMg01-485L01.TJ (MSMg01no485_l01.g1)
ACCAG565075AG565076
length735712
length of high quality
(start - end)		449 (53 - 501)270 (81 - 350)
definitionCHROMAT_FILE: MSMg01no485_l01.b1 PHD_FILE: MSMg01no485_l01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:43 2005CHROMAT_FILE: MSMg01no485_l01.g1 PHD_FILE: MSMg01no485_l01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCCACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTGAGACTTTCCGCCACCTTCCTGGTGAGTGCACAGGG
GTCCACCAGCCGGAGAAGTTTGTGCCTCAGGCCCCGGCAGGAGCCTCCTT
GGCTCCAGGACTCCGCGGAGGGAAGGCTGCATGGGTGACAGTGTGGAATA
CAGAGGCCAGCCATTTCTGGGACAGGCGAGAGCCACAGAGCTTCTGAGGC
GGCGCCATCTTAGGCTCCAGACAACCGGCCACCTTCCTGGCCAAAGCAAC
ACAGCTTCTGGGAAAGATCCTGTTTTGGGCCTTCATCTTCAGCCAGGAGG
AGGTCCAAACACCAGATAACTGTGCACCTTCCCTGAAAGAGGAGAGCTTG
CCTGCAGAGACTGCTCTGACCACTGAAACTCAGAGGAGAGAGTTAGTCTC
CCATGTCTGCTGATAGAGGGTAACAAAATCAACAGAGGAACAATCTCTAA
AACAAGACAACTATAACAACTAACTCCAGAGATTGCCAGATGGCGAAAAG
GTAAACGTGAGAATCCTACTAACAGAAACCAAGACCACTCCCCCTTCTTT
CAGAACCCAGCACTTCCACTTTCGCCCAGTTCCAGGGCTATCCTAACACC
ACCTGGAAAAAGGGTAAACCTTGGAATTTTAAAAACCTTTTTCTCCTGAA
GGAAGGGGGGGAAAAAACTTTAGAGTAAGGGGATT

NNNNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTATATTCAAAGCTTGAG
ATCACAAGATTATGTATATCAAGACAGCTGTGCAGTTTTTAAAATAATTC
TATCCTTTTTGAATTAACACTATTTTTTCCCCTCTCCATGTGGATTCACT
TTGAATATAAAGTATTTGCCTAATCAAAACCTAGGCAAGAAACTGAGCAC
NNTTGAAGTGCATAATGTATTTCCTTGTCCAATGGACAATGGTGGCCAAA
GAGAGATTGAGAATTTGGAAATAAATCTTACTTCATAGTGTTTTCCTTTT
TCATGAAAAACTGGCTAATGGGGAAAAAAAAGGGGGGGAAAGGGGAAAAA
CCACAAAAACCTGTTTAAAACTTTTAAAATTTTGGGGAAAANNNNNNNNN
NNNNNNNCNCTTTTTTTTTTTTGTTCCCGTTCCTTTTACTTTTGCCGTCG
TTGCTCCGCCCTTTGTTTTTTGCGATATCTCCTTTTATTTTTCTATTTTA
TTCATTATTACCATATTATTAGATGGCCCCCTCCCTGCGTCCCCATTGCC
CTTTTCTCCGTCTTTTATCCTCCTCCCGTGGTTTAGTTTGTTTTGTGGTG
GTGAACGTATAGGCGGGCTCTTGTCATCCTATACATTCACGCCTACGTCA
TATTACACACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_l01.g1 MSMg01no485_l01.g1 CHROMAT_FILE:
MSMg01no485_l01.g1 PHD_FILE: MSMg01no485_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:44 2005
         (270 letters)



>mm_chr2_43272804_43273470
          Length = 667

 Score =  503 bits (260), Expect = e-147
 Identities = 267/270 (98%), Gaps = 3/270 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttatattcaaagcttgagatcacaagattatgtatatcaagacagctgtgcagttttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 atttatattcaaagcttgagatcacaagattatgtatatcaagacagctgtgcagttttt 408

                                                                       
Query: 61  aaaataattctatcctttttgaattaacactattttttcccctctccatgtggattcact 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 407 aaaataattctatcctttttgaattaacacta-tttttcccctctccatgtggattcact 349

                                                                       
Query: 121 ttgaatataaagtatttgcctaatcaaaacctaggcaagaaactgagcacnnttgaagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 348 ttgaatataaagtatttgcctaatcaaaacctaggcaagaaactgagcac--ttgaagtg 291

                                                                       
Query: 181 cataatgtatttccttgtccaatggacaatggtggccaaagagagattgagaatttggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 cataatgtatttccttgtccaatggacaatggtggccaaagagagattgagaatttggaa 231

                                         
Query: 241 ataaatcttacttcatagtgttttcctttt 270
           ||||||||||||||||||||||||||||||
Sbjct: 230 ataaatcttacttcatagtgttttcctttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 667
Length adjustment: 9
Effective length of query: 261
Effective length of database: 658
Effective search space:   171738
Effective search space used:   171738
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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