BAC Information

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BAC

Clone NameMSMg01-486E10
Chromosome2 (Build37)
Map Location 134,646,382 - 134,646,949
singlet/doubletsinglet
Overlap genePlcb1
Upstream geneHao1, Txndc13, LOC627897, LOC433478
Downstream geneLOC100043487, LOC100043786, LOC100043788, Plcb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486E10.T7 (MSMg01no486_e10.b1)MSMg01-486E10.TJ (MSMg01no486_e10.g1)
ACCAG565517AG565518
length731766
length of high quality
(start - end)
567 (77 - 643)169 (76 - 244)
definitionCHROMAT_FILE: MSMg01no486_e10.b1 PHD_FILE: MSMg01no486_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:32 2005CHROMAT_FILE: MSMg01no486_e10.g1 PHD_FILE: MSMg01no486_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAAATG
GGCGGAATTCCTAAAGTTCCCCTATAAAATGAAACCCACTCACTTGTTAA
CTGGTTTGAAAAAAAATATGGCTTTCTTCTCTTTCTATCTCCCTTTCTCA
CCCCTGCTGTATCCTAGAACCACTTCTAAAGTCATCTGTTTTCACTGTAA
TCTTTGTTTGGGGTTGTCTTATTATGTATATGTAATACTAAATAGGTTAG
TGTAGATGTGTCTTGAATCAGCATGATAAACCTATAAGAATACCTATTCT
TTCATTAAGAGCCACTACTTTATTTTTGGGCTGGTTTCCCTGAAACAGAA
CTAATTTATATAGTCATGGCAGATGTGCCTGCCTTCGGGTTCAGTGTCTG
ATGTCTTATGTTTAATAAGTCACCTCAGGTCTTAGATGACTATCTGTCTC
TGCCCTGCTTTGTTCATCTGTAAAAAAGCATTGCTAAGTTAGGATAAGGA
TGAAGGTTCACTGTAAACAATAACATCATGCCTACTTCTTTGTGAACACC
CAGTCCTTTGTGGTGACTTTTGTTATAAACAATCTCTGACTACCCAGTTG
TTCCTAATGCATTGTTAGGGGCCATAAATGTGCGGCTTTGAAAGCCAAGT
TGACATTTATGTACGTTTGCATTTTTATTCCCGNTTTTCTTCTTGCTAAA
AGTGACCTGCTTTCTATTCAGGATTATTGTG
TCCAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGACTCAAGGAATTCAAAGCAGTGCTGGGAGCTGACA
GCGCTCAGTGGGGTAGAGGCCCTGGCCTTATAAACCTGAAACATGAGTTC
GATCCCATGTAAATGAAGAAGAAAGGAAAAAACTAATTAGACAAGTTTGT
ACTCTGACCCACCCTATCCCATCACACACACACACACACACACTCATACA
CACTTACTCACACTCACACTCACACATATTTTTAAAATTGTCAATAGAAT
TGGAACAAAGAAACAGAAATTTTTTTTATAATATGGAAGACTCAGACCTC
ATAACATACTACAGGGAAAATACCTGATTGAGGATGTAAATGTAATACAA
AAAGAAATATGTTCCATGTTGTATGCGGCTTTTAAGGCCACCTCTATATA
GCCCCAGACATCATGACAGTGAGAATCTCCCTTTACATATTGGGGATGAC
CTTATTCTATCCTCACTATTGCCACCTCCAGTATAAACTTATGGCCCCCA
TTTGAGGCATGTGACCATCTGTCCCTCTCCAAAATTTTTTGCGCTCCTAT
ATGTTCCTGTCCAATAGTTAATGCTGGTGACCAAACAGGCAAGGATATTT
CGAATGACAGGTCTCTTTCCAACATTAGATTTACTTTATATTCTCCTTCC
CTCCTAGCGTGTTTTAAGACCCCGTAGTACAATAACTGACCGTTTCGGTA
GCTACTTTTACCACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_e10.b1 MSMg01no486_e10.b1 CHROMAT_FILE:
MSMg01no486_e10.b1 PHD_FILE: MSMg01no486_e10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:32 2005
         (567 letters)



>mm_chr2_134646182_134647149
          Length = 968

 Score = 1031 bits (533), Expect = 0.0
 Identities = 559/573 (97%), Gaps = 11/573 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatgaaacccactcacttgttaactggtttgaaaaaaaa-tatggctttcttctctttc 59
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 aaatgaaacccactcacttgttaactggtttgaaaaaaaaatatggctttcttctctttc 260

                                                                       
Query: 60  tatctccctttctcacccctgctgtatcctagaaccacttctaaagtcatctgttttcac 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatctccctttctcacccctgctgtatcctagaaccacttctaaagtcatctgttttcac 320

                                                                       
Query: 120 tgtaatctttgtttggggttgtcttattatgtatatgtaatactaaataggttagtgtag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtaatctttgtttggggttgtcttattatgtatatgtaatactaaataggttagtgtag 380

                                                                       
Query: 180 atgtgtcttgaatcagcatgataaacctataagaatacctattctttcattaagagccac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtgtcttgaatcagcatgataaacctataagaatacctattctttcattaagagccac 440

                                                                       
Query: 240 tactttattttt-----gggctggtttccctgaaacagaactaatttatatagtcatggc 294
           |||||||          |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacttta-----agccagggctggtttccctgaaacagaactaatttatatagtcatggc 495

                                                                       
Query: 295 agatgtgcctgccttcgggttcagtgtctgatgtcttatgtttaataagtcacctcaggt 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 agatgtgcctgccttcgggttcagtgtctgatgtcttatgtttaataagtcacctcaggt 555

                                                                       
Query: 355 cttagatgactatctgtctctgccctgctttgttcatctgtaaaaaagcattgctaagtt 414
           ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 556 cttagatgactatctgtttctgccctgctttgttcatctgtaagaaagcattgctaagtt 615

                                                                       
Query: 415 aggataaggatgaaggttcactgtaaacaataacatcatgcctacttctttgtgaacacc 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 aggataaggatgaaggttcactgtaaacaataacatcatgcctacttctttgtgaacacc 675

                                                                       
Query: 475 cagtcctttgtggtgacttttgttataaacaatctctgactacccagttgttcctaatgc 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 cagtcctttgtggtgacttttgttataaacaatctctgactacccagttgttcctaatgc 735

                                            
Query: 535 attgttaggggccataaatgtgcggctttgaaa 567
           ||| |||||||||||||||||||||||||||||
Sbjct: 736 atttttaggggccataaatgtgcggctttgaaa 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 968
Length adjustment: 10
Effective length of query: 557
Effective length of database: 958
Effective search space:   533606
Effective search space used:   533606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)