Query= MSMg01no486_l16.b1 MSMg01no486_l16.b1 CHROMAT_FILE:
MSMg01no486_l16.b1 PHD_FILE: MSMg01no486_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:07 2005
(633 letters)
>mm_chr2_35800912_35801944
Length = 1033
Score = 1133 bits (586), Expect = 0.0
Identities = 616/630 (97%), Gaps = 8/630 (1%)
Strand = Plus / Plus
Query: 6 gaattcataaatgaatttc----ctaggcgtgatcacctgactcaagatgagctaacggg 61
||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcataaatgaa----agagctaggcgtgatcacctgactcaagatgagctaacggg 261
Query: 62 agtctgccttctgggaatgtgggagtcagagatgccaggcaacctctgttggcccatgga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agtctgccttctgggaatgtgggagtcagagatgccaggcaacctctgttggcccatgga 321
Query: 122 cctggggcaatgcacagacaaagctgaacagctggaggtgactgggtgggaagaagggac 181
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 322 ccgggggcaatgcacagacaaagctgaacagctggagttgactgggtgggaagaagggac 381
Query: 182 agacagttggctgagagagggggtagctgtggagatatctggccatgtttcccagagacc 241
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agacagtcggctgagagagggggtagctgtggagatatctggccatgtttcccagagacc 441
Query: 242 ggtggcgagacggaggttgctcaggcctgttgttctccccagcctgactgtctggcgtgc 301
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ggtggcgagacagaggttgctcaggcctgttgttctccccagcctgactgtctggcgtgc 501
Query: 302 cagtggcttcactcctataagataatcctgcatcttcccagtgttctaagttcctctttg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 502 cagtggcttcactcctataagataatcctgcatcttcccagtgttctaagttcctctctg 561
Query: 362 gcagaagctccagggtttcaattattttcagggagaaaatctcttgctgagacaaaaagg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gcagaagctccagggtttcaattattttcagggagaaaatctcttgctgagacaaaaagg 621
Query: 422 tctactctttctgctctgttcagctaccctgcaatgtcattagcaagttctgcatctgta 481
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 622 tctactctttctgctctgttcagctaccctgcaacgtcattagcaagttctgcatctgta 681
Query: 482 gatgaggctctttaaatgtgactctgatggcctcattaaagggaagcctgaagacctgct 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gatgaggctctttaaatgtgactctgatggcctcattaaagggaagcctgaagacctgct 741
Query: 542 agctcatatttagaacctgcttgttaaaagtccaaatagagagagatggctgtacattag 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 agctcatatttagaacctgcttgttaaaagtccaaatagagagagatggctgtacattag 801
Query: 602 ataaagccccttgacgttctcattttgaga 631
||||||||||||||||||||||||||||||
Sbjct: 802 ataaagccccttgacgttctcattttgaga 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_l16.g1 MSMg01no486_l16.g1 CHROMAT_FILE:
MSMg01no486_l16.g1 PHD_FILE: MSMg01no486_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:07 2005
(640 letters)
>mm_chr2_35965831_35966870
Length = 1040
Score = 727 bits (376), Expect = 0.0
Identities = 387/394 (98%), Gaps = 6/394 (1%)
Strand = Plus / Minus
Query: 1 ttctctagcaggtgactcttcgttttggaggactccactgatctagtgtcttctttgtac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttctctagcaggtgactcttcgttttggaggactccactgatctagtgtcttctttgtac 329
Query: 61 attaggagtgatgacaatggctttgtctgaggaagttcttactggacactagaccaatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 attaggagtgatgacaatggctttgtctgaggaagttcttactggacactagaccaatgc 269
Query: 121 caagtttctgttgttatcatcatcatcattacatttatttactcattctctgtgtgtgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 caagtttctgttgttatcatcatcatcattacatttatttactcattctctgtgtgtgtg 209
Query: 181 ttgtgtgttatgtgtttgtgggggcacatgtctatgggtggtggtcagagggtgacatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttgtgtgttatgtgtttgtgggggcacatgtctatgggtggtggtcagagggtgacatga 149
Query: 241 gggtattatttctctttccatcatggtgatctcaggaactgaactcagacatcaggcttg 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 gggtatcatttctctttccatcatggtgatctcaggaactgaactcagacatcaggcttg 89
Query: 301 gcaacaagtcccttaatctaatgagccatctcgatggccccagtatcaagttcctaactt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 ------agtcccttaatctaatgagccatctcgatggccccagtatcaagttcctaactt 35
Query: 361 gaagatacattttggattcctagaatcccaatac 394
||||||||||||||||||||||||||||||||||
Sbjct: 34 gaagatacattttggattcctagaatcccaatac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
