Query= MSMg01no486_o21.b1 MSMg01no486_o21.b1 CHROMAT_FILE:
MSMg01no486_o21.b1 PHD_FILE: MSMg01no486_o21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:23 2005
(658 letters)
>mm_chr2_165329827_165330884
Length = 1058
Score = 745 bits (385), Expect = 0.0
Identities = 394/397 (99%)
Strand = Plus / Minus
Query: 262 tggtccttagtctctcagttgatagagacaaggcagtttaagcccatggaagctcatatc 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1058 tggtccttagtctctcagttgatagagacaaggcagtttaagcccatggaagctcatatc 999
Query: 322 atgacaccgagagtcccagaagtcaggcatggatctccaggaattcctaattgcctttct 381
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998 atgacactgagagtcccagaagtcaggcatggatctccaggaattcctaattgcctttct 939
Query: 382 ggaattggttcttcctttagcccaaattttccttgctattctcctgtttcaacctgttag 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 ggaattggttcttcctttagcccaaattttccttgctattctcctgtttcaacctgttag 879
Query: 442 aggaacagtgtttattccctgagagggctgagagagtgaacctttctgtgaaccacgtta 501
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 aggaacagtgtttattcccagagagggctgagagagtgaacctttctgtgaaccacgtta 819
Query: 502 tctacaaatggggcaatagctatctcacaaccagtgttagctacaatgactctcccctga 561
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 tctacaaatgggacaatagctatctcacaaccagtgttagctacaatgactctcccctga 759
Query: 562 acagcctagggtaaggttttaacagacaaattaccccatccatcattgcagcttgaatcc 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 acagcctagggtaaggttttaacagacaaattaccccatccatcattgcagcttgaatcc 699
Query: 622 tccagcttcccttgtcatttggaatgacatccaaaga 658
|||||||||||||||||||||||||||||||||||||
Sbjct: 698 tccagcttcccttgtcatttggaatgacatccaaaga 662
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_o21.g1 MSMg01no486_o21.g1 CHROMAT_FILE:
MSMg01no486_o21.g1 PHD_FILE: MSMg01no486_o21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:23 2005
(603 letters)
>mm_chr2_165311209_165312211
Length = 1003
Score = 1123 bits (581), Expect = 0.0
Identities = 595/603 (98%), Gaps = 7/603 (1%)
Strand = Plus / Plus
Query: 1 ctagacacatggtgtgttgtgcagtagcaatggggttgactctgtaggttgtcaagagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctagacacatggtgtgttgtgcagtagcaatggggttgactctgtaggttgtcaagagga 260
Query: 61 aagctgactcaactctgtcatctggaacatatcgaaagctgtctcctgccttcccagcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagctgactcaactctgtcatctggaacatatcgaaagctgtctcctgccttcccagcat 320
Query: 121 gcacttctagctttcctcttggcatcccttgcttttcctcagaactcgttagaaatgcag 180
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 gcacttctagctttcctcttggcatcccttgcttttcctcag------ttagaaatgcag 374
Query: 181 attctctggcaacgagggaagcaggaactagcctcgttactcagtctacagtgggctgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 attctctggcaacgagggaagcaggaactagcctcgttactcagtctacagtgggctgcc 434
Query: 241 acagcctgtcttcagtctccataaacaataccacttgaatggcttcatgacagtgcttgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 acagcctgtcttcagtctccataaacaataccacttgaatggcttcatgacagtgcttgc 494
Query: 301 tcactgtggtgtgcctagccttgtggccatgtcccacctgaatggtgacatctgtgtctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tcactgtggtgtgcctagccttgtggccatgtcccacctgaatggtgacatctgtgtctg 554
Query: 361 tagtgctctgtgactcagctccccttcaaggaaggactggagtttcagggagggacagca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tagtgctctgtgactcagctccccttcaaggaaggactggagtttcagggagggacagca 614
Query: 421 gcttctggctgtcaagcatggggggcatgggtctccttgcccatgcccctgctccacctc 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 615 gcttctggctgtcaagcatggggg-catgggtctccttgcccatgcccctgctccacctc 673
Query: 481 agggaggcccagtggagactctgtgatgtgggataccaaaggcctggccaccctgtccca 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 agggaggcccactggagactctgtgatgtgggataccaaaggcctggccaccctgtccca 733
Query: 541 tcatgggacatttctgacagccatctggctgcatagctttggggctggctgagggttgct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tcatgggacatttctgacagccatctggctgcatagctttggggctggctgagggttgct 793
Query: 601 ggc 603
|||
Sbjct: 794 ggc 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
