Query= MSMg01no486_p14.b1 MSMg01no486_p14.b1 CHROMAT_FILE:
MSMg01no486_p14.b1 PHD_FILE: MSMg01no486_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:26 2005
(394 letters)
>mm_chr2_169708439_169709236
Length = 798
Score = 681 bits (352), Expect = 0.0
Identities = 385/398 (96%), Gaps = 5/398 (1%)
Strand = Plus / Plus
Query: 1 acagatggcacagaggacagcacttggggtctggaatgtactcagttggggtgatgcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 acagatggcacagaggacagcacttggggtctggaatgtactcagttggggtgatgcatg 261
Query: 61 catgaaagctgggtctattcccagcgtcacataaaccacacatgacggtacatgcttgta 120
|||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||
Sbjct: 262 catgaaagctgggtctatccccagcgtcacataaactagacatgacggtacatgcttgta 321
Query: 121 tgctcagcactgaggaagtagaggcaggaggatcaaaagttcatgtcctgctacatagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgctcagcactgaggaagtagaggcaggaggatcaaaagttcatgtcctgctacatagca 381
Query: 181 agtttgaggccagcctgggggggctacatgagaccgtgtcctaaaataagactccagcat 240
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 382 agtttgaggccagcctgggggg-ctacatgagaccgtgtcccaaaataagactccagcat 440
Query: 241 ttatcgttttccctgtttctgttgaagttggtaaacgtatagattgcattgctattcagt 300
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 ttatcgtttcccctgtttctgttgaagttggtaaaagtatagattgcattgctattcagt 500
Query: 301 tcaggctgggtacacagggctgtggggatggattctgtccgctgttgctacacctagatc 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 501 tcaggctgggtacacagggctgtggagatggattctgtccgctgttgctacacctagttc 560
Query: 361 atctctctctct----gtctcctgcagggtatgcccag 394
|||||||||||| ||||||||||||||||||||||
Sbjct: 561 atctctctctctctctgtctcctgcagggtatgcccag 598
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 798
Length adjustment: 9
Effective length of query: 385
Effective length of database: 789
Effective search space: 303765
Effective search space used: 303765
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_p14.g1 MSMg01no486_p14.g1 CHROMAT_FILE:
MSMg01no486_p14.g1 PHD_FILE: MSMg01no486_p14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:26 2005
(629 letters)
>mm_chr2_169861955_169862984
Length = 1030
Score = 1203 bits (622), Expect = 0.0
Identities = 625/626 (99%), Gaps = 1/626 (0%)
Strand = Plus / Minus
Query: 1 ctgctgttttgtgtacatagagggtgacaggagctaatgtggtaatttaagctgtaaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 ctgctgttttgtgtacatagagggtgacaggagctaatgtggtaatttaagctgtaaatg 767
Query: 61 agtcttcactttgtgttcattaattacagctaattactgaattacaaaccttcttggtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 agtcttcactttgtgttcattaattacagctaattactgaattacaaaccttcttggtta 707
Query: 121 ggctctgttatgtattcctgtagcatgttgaatctccagctggtagagaactgttttata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ggctctgttatgtattcctgtagcatgttgaatctccagctggtagagaactgttttata 647
Query: 181 gacttacaagctgacacgctaagccaccactgaaacaattcagtttgaaaacaagggggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 gacttacaagctgacacgctaagccaccactgaaacaattcagtttgaaaacaagggggt 587
Query: 241 gggaacggagagcctcgcatgctttccggaattaaaagaacagacacggcgctcgagact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gggaacggagagcctcgcatgctttccggaattaaaagaacagacacggcgctcgagact 527
Query: 301 ctcatcttggggaatagatgatcttgcacacataattagaacaatttatgccacaggaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ctcatcttggggaatagatgatcttgcacacataattagaacaatttatgccacaggaaa 467
Query: 361 agg-aaaaaaaaagcaacaaatgctaggctgttctccacgctgagcgcaatctaccctgt 419
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 aggaaaaaaaaaagcaacaaatgctaggctgttctccacgctgagcgcaatctaccctgt 407
Query: 420 agcgtgaaatttatgagtgtccctgcccttatcttcctgttccttagaaactgaacgtct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 agcgtgaaatttatgagtgtccctgcccttatcttcctgttccttagaaactgaacgtct 347
Query: 480 gattatttattaagggaccctgcttttaataacgagaagatatcaaggatgcggaaaatc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gattatttattaagggaccctgcttttaataacgagaagatatcaaggatgcggaaaatc 287
Query: 540 ttgcccagtgttcatgatcacaaatggccacggagaaaagatccagggtgatgggtcaag 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ttgcccagtgttcatgatcacaaatggccacggagaaaagatccagggtgatgggtcaag 227
Query: 600 ggcttagcttcactgattatctctta 625
||||||||||||||||||||||||||
Sbjct: 226 ggcttagcttcactgattatctctta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1030
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1020
Effective search space: 631380
Effective search space used: 631380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
