BAC Information

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BAC

Clone NameMSMg01-488A10
Chromosome2 (Build37)
Map Location 155,773,220 - 155,897,171
singlet/doubletdoublet
Overlap geneCep250, Ergic3, Fer1l4, Spag4
Upstream genea, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5
Downstream geneCpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3, LOC668943, Dsn1, 9830001H06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488A10.T7 (MSMg01no488_a10.b1)MSMg01-488A10.TJ (MSMg01no488_a10.g1)
ACCAG566848AG566849
length744728
length of high quality
(start - end)		692 (53 - 744)244 (72 - 315)
definitionCHROMAT_FILE: MSMg01no488_a10.b1 PHD_FILE: MSMg01no488_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:49 2005CHROMAT_FILE: MSMg01no488_a10.g1 PHD_FILE: MSMg01no488_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,773,220 - 155,773,907)(155,896,928 - 155,897,171)
sequence
GAGGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTTATGTCTCTCATAATTTATGTACATATCTGTCTATC
CCATTAGATTATAACTACACTGTACCATATTTGTCTTTCAATTATTCCCA
GGGCTTGGCACAGAGCCCAGCCCATAGCAGAGTCTCGGAGTGTGTTGTAT
GAATGGCCCTCAAACTGGCCCTTTTAAAGGAACACTATTGTTTTCTTTTG
TATCATTTCTGTTTTAAAATTAGAGTAAATAACTGGTTTCATTGTAATGT
TTCCACATGTGCATGCCCTTATCCTTCTGTCACATTCACTCCCTTATCAC
CTCTCCCCACCCACGCCCCCTTCTTCCACCCAGGAACCCTTCTACTTCCT
GTTATATCTAGATATTTAAATACACAACTTTTGCATATGAAAGAAGAAAA
TAACTCGATGTCCATGCCCCCACCCTTCATTAACTTCCTGCTTTCATGTG
TCCCCATCAGTCCCTTCAGCCTCCCAGCAGTCACTTGTCCCCCTTCTGCT
TTCAGAACATATATGTAGATCCAGATGCTACATACATGAGAAAGCATGGG
CTGTGTGTGTGGTCAAGTCTCAGACGCCATCATTTTTAACATACTCTGCC
TCCTCTACTAGACTTCAAGTTCTTAAAAGGGAGAGACACTGTCTTGCTAC
TAGCAAAGTAAGCTCTATCCACTGAATAAACAAAGTTATGAATG

CTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCCCCCGCGGAATTCCAGGCCAGCCTTGGAGGGAGCAAA
AAAGTAATGCAGGAAAAGTTTTAAAGATTGTTTCTTATGGCGGAACTGCC
CTTTGTGTATGTGTACTGCGTGTGGACTGAAACCGAGACCGTGGAGGGTT
TTTGTTGTTTGTATTTTCTGGGCGTTGGTGTTTTGTGCGCATGCGTCTCT
GTGTGAGGGTGTCAGATCCCTTGGAACTGGAGTTACGGTGGGAGCTGCCG
TGTGGGGGCTGGGCATTTTTTTCTGGTCCTCTGAAAGAGTAGCCTGAGCT
CTTAACCACTGAGTCATCTCTCCAGCTAAAGAACCATGGACCCTCACATA
CTAGGCAAACCTGTGCTCTGCCAGCTCCATCACTAGGCTACACTGCCAGC
AACTCTTTTTTTTTTTTTTTTTGGTTTTTTGAGACAGGGTTCCTGGCTGT
CCTGGAACTCACTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTG
CTGGGATTAAAGGCTGCGCCACCACGCCCGGCCAGCAAGTCCTTTTTATT
ATTTTTTTTCATCTCTATTTTTTGGAGACAGTTTTACTATGTAGACCAGG
CTGGCCTCGTACTGAGAGATCCACCTGCCTCTGCCTCCCAAATGCTGCGA
TTCATGGTATGTCCTACCATGTCCAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_a10.b1 MSMg01no488_a10.b1 CHROMAT_FILE:
MSMg01no488_a10.b1 PHD_FILE: MSMg01no488_a10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:49 2005
         (692 letters)



>mm_chr2_155773016_155774107
          Length = 1092

 Score = 1315 bits (680), Expect = 0.0
 Identities = 686/688 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttatgtctctcataatttatgtacatatctgtctatcccattagattataact 64
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttatgcctatcataatttatgtacatatctgtctatcccattagattataact 264

                                                                       
Query: 65  acactgtaccatatttgtctttcaattattcccagggcttggcacagagcccagcccata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acactgtaccatatttgtctttcaattattcccagggcttggcacagagcccagcccata 324

                                                                       
Query: 125 gcagagtctcggagtgtgttgtatgaatggccctcaaactggcccttttaaaggaacact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcagagtctcggagtgtgttgtatgaatggccctcaaactggcccttttaaaggaacact 384

                                                                       
Query: 185 attgttttcttttgtatcatttctgttttaaaattagagtaaataactggtttcattgta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attgttttcttttgtatcatttctgttttaaaattagagtaaataactggtttcattgta 444

                                                                       
Query: 245 atgtttccacatgtgcatgcccttatccttctgtcacattcactcccttatcacctctcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgtttccacatgtgcatgcccttatccttctgtcacattcactcccttatcacctctcc 504

                                                                       
Query: 305 ccacccacgcccccttcttccacccaggaacccttctacttcctgttatatctagatatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccacccacgcccccttcttccacccaggaacccttctacttcctgttatatctagatatt 564

                                                                       
Query: 365 taaatacacaacttttgcatatgaaagaagaaaataactcgatgtccatgcccccaccct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taaatacacaacttttgcatatgaaagaagaaaataactcgatgtccatgcccccaccct 624

                                                                       
Query: 425 tcattaacttcctgctttcatgtgtccccatcagtcccttcagcctcccagcagtcactt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcattaacttcctgctttcatgtgtccccatcagtcccttcagcctcccagcagtcactt 684

                                                                       
Query: 485 gtcccccttctgctttcagaacatatatgtagatccagatgctacatacatgagaaagca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtcccccttctgctttcagaacatatatgtagatccagatgctacatacatgagaaagca 744

                                                                       
Query: 545 tgggctgtgtgtgtggtcaagtctcagacgccatcatttttaacatactctgcctcctct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgggctgtgtgtgtggtcaagtctcagacgccatcatttttaacatactctgcctcctct 804

                                                                       
Query: 605 actagacttcaagttcttaaaagggagagacactgtcttgctactagcaaagtaagctct 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 actagacttcaagttcttaaaagggagagacactgtcttgctactagcaaagtaagctct 864

                                       
Query: 665 atccactgaataaacaaagttatgaatg 692
           ||||||||||||||||||||||||||||
Sbjct: 865 atccactgaataaacaaagttatgaatg 892


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no488_a10.g1 MSMg01no488_a10.g1 CHROMAT_FILE:
MSMg01no488_a10.g1 PHD_FILE: MSMg01no488_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:49 2005
         (244 letters)



>mm_chr2_155896789_155897432
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattccaggccagccttggagggagcaaaaaagtaatgcaggaaaagttttaaagattgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aattccaggccagccttggagggagcaaaaaagtaatgcaggaaaagttttaaagattgt 324

                                                                       
Query: 61  ttcttatggcggaactgccctttgtgtatgtgtactgcgtgtggactgaaaccgagaccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttcttatggcggaactgccctttgtgtatgtgtactgcgtgtggactgaaaccgagaccg 264

                                                                       
Query: 121 tggagggtttttgttgtttgtattttctgggcgttggtgttttgtgcgcatgcgtctctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tggagggtttttgttgtttgtattttctgggcgttggtgttttgtgcgcatgcgtctctg 204

                                                                       
Query: 181 tgtgagggtgtcagatcccttggaactggagttacggtgggagctgccgtgtgggggctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tgtgagggtgtcagatcccttggaactggagttacggtgggagctgccgtgtgggggctg 144

               
Query: 241 ggca 244
           ||||
Sbjct: 143 ggca 140


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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