BAC Information

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BAC

Clone NameMSMg01-488F05
Chromosome2 (Build37)
Map Location 88,972,297 - 88,972,960
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222
Downstream geneOlfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488F05.T7 (MSMg01no488_f05.b1)MSMg01-488F05.TJ (MSMg01no488_f05.g1)
ACCAG567076AG567077
length707839
length of high quality
(start - end)		673 (30 - 702)---
definitionCHROMAT_FILE: MSMg01no488_f05.b1 PHD_FILE: MSMg01no488_f05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:12 2005CHROMAT_FILE: MSMg01no488_f05.g1 PHD_FILE: MSMg01no488_f05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTCTTTGCTT
TAAGTCACACTTTTTGAGCATTAGTGTCTTCTCCTGTGTTATGTGCTAAG
TTTGTACTTGTGAAAACAGCCTGTTTATTTGCTATCAATAACTATGAAGC
ATGTAAGAGCATTTTAATTACCATGTTTTAATATATGCATTCTTTAAACA
ACTTCAAATCATACCAGCTTTAAATGCAAATGTTATATTTATGAGTCTAT
GAACATATAAATTAACATGTATTCAGAAAAAGAAAGATTTTTGAAGAGAT
AAAAGTCTTGTATCATATTTCTGAGTTGTTTGGTTCCCATTTGAAGATGA
AACATTTAAACTATGTTTAATATTGTAAAACTTGAGAAATAAAATAGGAA
TGAAATAGAACTTCCTTGGACAGAAGAAAGTAAGAAAGAATAGACTAAGA
GAAGAAGGAGGAGAGGAAGGAAATGAGTTTTTACTATAATAACATTTATT
TGAGCCCTGTGACCACTTGAGCAATTATTCACTGTGGAGTGCTTTTCTGT
GGTCTCATTTTATTCACCTCAGAACCACTGACACTGATCACACAATCTCT
GTAATGGAAGCAATGAACACCAGGATTATTGCTACTCTCAAGAACAGTTA
TACAATGAACAGATCATGACTATATTAAATGTTACACTTTATCACAATTT
AAAAATC

NNNCCCCCCTTTTTNNCNNAGTGGAGGGATAGGCGGGGCAGGATCCCCCC
GCCAAGTTTNGGGGGCCCGCACTGTATATCCTCCCTCACCGAGGAGGAGA
GGGTTTTGNATCTCCCCCCGACATCGCATATACTCCCCGTCGCGGGGATG
CCCGCAGGCCGTNCGGGGTGGGGGAGAGTCTAGAGGAGGTCCGGCGTGAG
GCCNCCCCCCCAAACCATACAACAGCAGCCCCACACCCCCCATTNACCCA
TCCATTCCCCCCCTGGTTCCCCCCAACGCTACACACACGTATGTTATCTC
TCTCCCNCCNNNNNNNGGCCNNNNCCNATGANTTCCACCCCCTCCCCCAN
NCNNNNCCCNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNGGGGG
GGNAAGGAGCAGCGCTAGGNAGNNNAGGGAGGGGGAANAANAAGGNNTAG
GGGAGAGAAAGCCAGGGGNNNNAAAAGGGGGAGGGCGCTGNNNNAGGGGA
GGAGGAGNNGGGAGCAGGCGGCNNNNTGGNNNNNNCCCGCGCNAAANTAC
CAAGAGGGGAGGCGAGGGGCGCCNAGAGANNNCGNNNNNCCCCCCCCCCG
GGAGNCCCCGGGTCGGANCCAGTATGTAGGAAGGGGGGAGAGNGNNTGGA
AATGCCGCGNNNNNNGAGGGNTAAGTAGTCCTAGGAGTGGGAGTGATTAG
GNNTATGTCNTTATAAAAANNAATAACCCCAAAAGGGGGAATTTTTTGAG
TAGGAGGGGGNAANNNNNNACCCCCCCGAGAANTTTGTGTTGGGGGAGTT
CCCCTCCCCCCCCACAAAAAGNCAGAGGGGGAGAGGAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_f05.b1 MSMg01no488_f05.b1 CHROMAT_FILE:
MSMg01no488_f05.b1 PHD_FILE: MSMg01no488_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:12 2005
         (673 letters)



>mm_chr2_88972093_88973161
          Length = 1069

 Score = 1214 bits (628), Expect = 0.0
 Identities = 657/668 (98%), Gaps = 4/668 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactctttgctttaagtcacactttttgagcattagtgtcttctcctgtgttatg 64
           ||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactcagtgatttaagtcacactttttgagcattagtgtcttctcctgtgttatg 264

                                                                       
Query: 65  tgctaagtttgtacttgtgaaaacagcctgtttatttgctatcaataactatgaagcatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgctaagtttgtacttgtgaaaacagcctgtttatttgctatcaataactatgaagcatg 324

                                                                       
Query: 125 taagagcattttaattaccatgttttaatatatgcattctttaaacaacttcaaatcata 184
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caagagcattttaattaccatgttttaatatatgcattctttaaacaacttcaaatcata 384

                                                                       
Query: 185 ccagctttaaatgcaaatgttatatttatgagtctatgaacatataaattaacatgtatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccagctttaaatgcaaatgttatatttatgagtctatgaacatataaattaacatgtatt 444

                                                                       
Query: 245 cagaaaaagaaagatttttgaagagataaaagtcttgtatcatatttctgagttgtttgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagaaaaagaaagatttttgaagagataaaagtcttgtatcatatttctgagttgtttgg 504

                                                                       
Query: 305 ttcccatttgaagatgaaacatttaaactatgtttaatattgtaaaacttgagaaataaa 364
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 505 ttcccatttgaagatgaaacatttaaactatgtttaatactgtaaaacttgagaaataaa 564

                                                                       
Query: 365 ataggaatgaaatagaacttccttggacagaagaaagtaagaaagaatagactaagagaa 424
           |||||||||||||||||||||||||||||||||||| || |||||||||||||||   ||
Sbjct: 565 ataggaatgaaatagaacttccttggacagaagaaaata-gaaagaatagactaa---aa 620

                                                                       
Query: 425 gaaggaggagaggaaggaaatgagtttttactataataacatttatttgagccctgtgac 484
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 gaaggaggagaggaaggaaatgagtttgtactataataacatttatttgagccctgtgac 680

                                                                       
Query: 485 cacttgagcaattattcactgtggagtgcttttctgtggtctcattttattcacctcaga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacttgagcaattattcactgtggagtgcttttctgtggtctcattttattcacctcaga 740

                                                                       
Query: 545 accactgacactgatcacacaatctctgtaatggaagcaatgaacaccaggattattgct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 accactgacactgatcacacaatctctgtaatggaagcaatgaacaccaggattattgct 800

                                                                       
Query: 605 actctcaagaacagttatacaatgaacagatcatgactatattaaatgttacactttatc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 actctcaagaacagttatacaatgaacagatcatgactatattaaatgttacactttatc 860

                   
Query: 665 acaattta 672
           ||||||||
Sbjct: 861 acaattta 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1069
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1059
Effective search space:   702117
Effective search space used:   702117
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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