BAC Information

Click to search

BAC

Clone NameMSMg01-488P14
Chromosome2 (Build37)
Map Location 86,622,383 - 86,623,028
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302
Downstream geneOlfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488P14.T7 (MSMg01no488_p14.b1)MSMg01-488P14.TJ (MSMg01no488_p14.g1)
ACCAG567569AG567570
length722746
length of high quality
(start - end)		552 (61 - 612)642 (74 - 715)
definitionCHROMAT_FILE: MSMg01no488_p14.b1 PHD_FILE: MSMg01no488_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:02 2005CHROMAT_FILE: MSMg01no488_p14.g1 PHD_FILE: MSMg01no488_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGAATTCTACTA
TTGCAATATCTCCCTTCGCCAATGAGTTCAAAGCCTCCCCCCTTTTTTCT
GGCTTTTTTTTTATTAGATATTTTCTTCATTTACATTTTAAATATTTCAA
ATGCTATTCCCAAGGTCCCCTATAACTTCCCCCTGTACTGCTCCCCAACC
TACGCACTTCTGCTTCCTGGCCCTGGCATTCCCCGGTACTGGGGCATATA
ATCTTCACAAGACCAAGGGCCTCTCTTCCCATTGATGGCCTGCTAGGCCA
TCCTTTTTTTTATATGCAACTAGAGACACAAGCTCTGGGATGTACTGGTT
AGTTCATATTGTTGTTCTTCCTATAGGGTTGCAGACCCCTTTAGCTCCTT
GGGTACTTTCTCTAGCTTCTTCATTGAGGGCCCTGTGTTCCATCCAATAG
ATGACTGTGCGTGTCCACTTCTGTATTTGTCAGGCACTGGCATAGCCTCA
CAAAAGGCAGCTATATCAGGGTCCTGTCAGCAAAATCTTCTGGCATATGC
AATAGTGTCTTGGTTTGGTGGTTGTTTATGGGTTGGATCCCCAGGTGGGG
CAGTCTCTTGATGGGCCTTGTCCACTTTCTCTTCTATTAAATTCAGTATA
TCTGACTTTATGTTCAGGTCCTTGATCCATTTGGACTTGAGTTTATACAA
CGTGGACAATATCAATCTATCT

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATCTGTTTTATAGCATTTTCACAAGG
CTGTGAACTCAACATTACATAAGTAGAATTAGAGATGGAACTATGACTGC
ATGAGTGAAATATTTTTCCTATGTGAAAGAACATTAAGTTTAAACAAGAC
AGAATTGCGTCAGTGTATTCATTTTCAGTACATTTTCCTAAGATCATTCC
CTTTGTTTATCTTTTTTCTTTCTTTCTTTTTTTTTTAAGTGAGGACTTTC
TGTCCCCGTGAAGAACATGGATTCTCCCAGGGGCTTCACTGTGGTGTTTA
AAAGTTCCATAGGATGGGGTTTGTTCACATGTGTTATGACTTGACCATTA
TCTAACTGACCAAGCAGCTCAATTTTGTAAGTAAGTGTAGGCTTTTTCTT
TATTTATAGTGTTTTAAATGATAGAGTGGATTTCAAGTTTGAATACTTAA
TGTGTCTGAGTACTTAAATACAATATAAAACATCATATTTAACAGAGTTG
TGTTGTAAATTGAGCCAATAACTTCTAAAAAGAAAAATGGATAAGGATGA
AGAATCATTCACATATTTTGGAAATAATTCTCACGTTTGTTTTAATGTTT
TGATAAATCAATTAGAATAGAAAGCTAACTTTCAGTGAGTTTTTATGGAT
AGGATTTTTCCTCACTCAATTTTCTGTAAATTTGATTTCTGACGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_p14.g1 MSMg01no488_p14.g1 CHROMAT_FILE:
MSMg01no488_p14.g1 PHD_FILE: MSMg01no488_p14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:02 2005
         (642 letters)



>mm_chr2_86622186_86623228
          Length = 1043

 Score = 1199 bits (620), Expect = 0.0
 Identities = 639/646 (98%), Gaps = 4/646 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catctgttttatagcattttcacaaggctgtgaactcaacattacataagtagaattaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 catctgttttatagcattttcacaaggctgtgaactcaacattacataagtagaattaga 257

                                                                       
Query: 61  gatggaactatgactgcatgagtgaaatatttttcctatgtgaaagaacattaagtttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gatggaactatgactgcatgagtgaaatatttttcctatgtgaaagaacattaagtttaa 317

                                                                       
Query: 121 acaa-gacagaattgcgtcagtgtattcattttcagtacattttcctaagatcattccct 179
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 acaaagacagaattgcgtcagtgtattcattttcagtacattttcctaagatcattccct 377

                                                                       
Query: 180 ttgtttatcttttttctttctttctttttttttt--aagtgaggactttctgtccccgtg 237
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 378 ttgtttatcttttttctttctttcttttttttttttaagtgaggactttctgtccccgtg 437

                                                                       
Query: 238 aagaacatggattctcccaggggcttcactgtggtgtttaaaagttccataggatggggt 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aagaacatggattctcccaggggcttcactgtggtgtttaaaagttccataggatggggt 497

                                                                       
Query: 298 ttgttcacatgtgttatgacttgaccattatctaactgaccaagcagctcaattttgtaa 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttgttcacatgtgttatgacttgaccattatctaactgaccaagcagctcaattttgtaa 557

                                                                       
Query: 358 gtaagtgtaggctttttctttatttata-gtgttttaaatgatagagtggatttcaagtt 416
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 558 gtaagtgtaggctttttctttatttataagtgttttaaatgatagagtggatttcaagtt 617

                                                                       
Query: 417 tgaatacttaatgtgtctgagtacttaaatacaatataaaacatcatatttaacagagtt 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tgaatacttaatgtgtctgagtacttaaatacaatataaaacatcatatttaacagagtt 677

                                                                       
Query: 477 gtgttgtaaattgagccaataacttctaaaaagaaaaatggataaggatgaagaatcatt 536
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gtgttgcaaattgagccaataacttctaaaaagaaaaatggataaggatgaagaatcatt 737

                                                                       
Query: 537 cacatattttggaaataattctcacgtttgttttaatgttttgataaatcaattagaata 596
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 738 cacatattttggaaataattctcacgtttgttttaatgttttgataaattaattataata 797

                                                         
Query: 597 gaaagctaactttcagtgagtttttatggataggatttttcctcac 642
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gaaagctaactttcagtgagtttttatggataggatttttcctcac 843


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1043
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1033
Effective search space:   652856
Effective search space used:   652856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |