Query= MSMg01no489_l02.b1 MSMg01no489_l02.b1 CHROMAT_FILE:
MSMg01no489_l02.b1 PHD_FILE: MSMg01no489_l02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:01 2005
(638 letters)
>mm_chr2_178494174_178495212
Length = 1039
Score = 1002 bits (518), Expect = 0.0
Identities = 590/644 (91%), Gaps = 50/644 (7%)
Strand = Plus / Plus
Query: 1 gaaacaggaatcacaattcctgtggcatttgacagatttgttgttacatgggaagggcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaacaggaatcacaattcctgtggcatttgacagatttgttgttacatgggaagggcta 260
Query: 61 tgtgcagagagcagctgtgatcagctgagcctcagcaacaatgaaaatgccactcaggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgcagagagcagctgtgatcagctgagcctcagcaacaatgaaaatgccactcaggac 320
Query: 121 cctagagagagtcttgctggtccatgatggtggcactcagggtcctagagagaggtcttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctagagagagtcttgctggtccatgatggtggcactcagggtcctagagagaggtcttg 380
Query: 181 ttggtccatgatgttgacactcaggaccctagaacgagtcttgttgatccatgatgcaga 240
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 ttggtccatgatgttggcactcaggaccctagaaagagtcttgttgatccatgatgcaga 440
Query: 241 tattcaggaccctagagagagtcttgctggtccatgatggtggcactcagggtcctagag 300
|||||||||| |||||||
Sbjct: 441 tattcaggac-------------------------------------------cctagag 457
Query: 301 agaggtcttgttggtccatgatgctggcacaactggatagcccaaagctgaagggtggag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 agaggtcttgttggtccatgatgctggcacaactggatagcccaaagctgaagggtggag 517
Query: 361 cacatcttctcactacacaaaaacggaactcgtactggaccacaaccatactgtagaaat 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 518 cacatcttctcactacacaaaaacggaactcatactggaccacaaccatactgtagaaat 577
Query: 421 caaataaaatacagaggaaaaaatttcatagccttggatgcagcaaaggatacttggtca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 caaataaaatacagaggaaaaaatttcatagccttggatgcagcaaaggatacttggtca 637
Query: 481 tgacagcagcagtacaaactatttttaaaatggctattgtttcaacaaagtttaatcttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tgacagcagcagtacaaactatttttaaaatggctattgtttcaacaaagtttaatcttt 697
Query: 541 gggactttgaaagaaaaaatggaaagaaagatagagaaagagagagagaga--aaggaag 598
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 698 gggactttgaaagaaaaaatggaaagaaagaaagagaaagagagagagagagaaaggaag 757
Query: 599 gaagata-agaagaga---gaagagaagagaagagaagagaaga 638
||||| | |||||||| |||||||||||||||||||||||||
Sbjct: 758 gaaga-agagaagagaagagaagagaagagaagagaagagaaga 800
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1039
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1029
Effective search space: 646212
Effective search space used: 646212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no489_l02.g1 MSMg01no489_l02.g1 CHROMAT_FILE:
MSMg01no489_l02.g1 PHD_FILE: MSMg01no489_l02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:01 2005
(372 letters)
>mm_chr2_178666904_178667674
Length = 771
Score = 607 bits (314), Expect = e-178
Identities = 358/373 (95%), Gaps = 3/373 (0%)
Strand = Plus / Minus
Query: 1 ggatgtaatgatcttctctaaggctgctgttgtagaaaggacttgttaaggctgtggacg 60
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 571 ggatgtaatgatcttctctaaggttgctgttgtagaaaggacttgttaaggctgtggatg 512
Query: 61 gcggtagatctataggtagaaaatacactgggttttgtagttagtcccaaggccaggact 120
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 511 gcggtggatctataggtagaaaatacactgggttttgtagttagtcccaagg-caggact 453
Query: 121 cttcttctcc-gcaccacctggggaccagaaggaccatgcctgtaccctgcacagagatg 179
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cttcttc-cctgcaccacctggggaccagaaggaccatgcctgtaccctgcacagagatg 394
Query: 180 ttctaaatagcatgtctgtcttggagacagtgctgattctgagtcctttgaaaacctctt 239
||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 393 ttctaaataacatgtctgtcttggagacagtgctggttctgagtcctttgaaaatctctt 334
Query: 240 cttttctcctctcatccttgcctctgtggnctttatctgccacctttcctgaggctgggg 299
|||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||
Sbjct: 333 cttttctcctctcatccttgcctccgtggtctttacctgccacctttcctgaggctgggg 274
Query: 300 actgcccatcactcagatttctgcagcagctcccacgaagcacagaggagagccggacag 359
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct: 273 actgcccatcactcagatttctgcagcagctcccaggaagcacagagaagagctggacag 214
Query: 360 ccccaggggctct 372
|||||||||||||
Sbjct: 213 ccccaggggctct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 771
Length adjustment: 9
Effective length of query: 363
Effective length of database: 762
Effective search space: 276606
Effective search space used: 276606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
