BAC Information

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BAC

Clone NameMSMg01-489O05
Chromosome2 (Build37)
Map Location 179,961,465 - 179,962,027
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039413, Cdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5
Downstream geneRps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489O05.T7 (MSMg01no489_o05.b1)MSMg01-489O05.TJ (MSMg01no489_o05.g1)
ACCAG568258AG568259
length748629
length of high quality
(start - end)
563 (82 - 644)47 (86 - 132)
definitionCHROMAT_FILE: MSMg01no489_o05.b1 PHD_FILE: MSMg01no489_o05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:17 2005CHROMAT_FILE: MSMg01no489_o05.g1 PHD_FILE: MSMg01no489_o05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTNGTTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAAG
GATCCGCGGAATTCCGGGTTTCGAAAGAGGAAGCATCCAGGGAGGGCAGC
TTGTCTTGACCTCGCATTTTCAACGGAGACTGGGGTCCTCCCAGCCCCTT
GGGGTTTAAGATTTGTAGGAGGCTGGGGGTTTAGTCAGGAGGGCAGGAGA
ATGGTGCAAATTTTCCAGACAATTACGGGTCAGAACTGGGCCAGGACATG
ATGGCAGTGTTTCAGGAACTCACTGGGACCCTTGGGATTATCCAGAAGGA
CCAGCAAGAATGGGAGTCCTACCTTTTTACGTGAGATGGTGGCCTGGCTA
GGAGATAAGGGGAGCTGCTAGCCCTGCTGCTGAGTTCGACCTCTACACCC
CTGGGGGCTTTCCTGTTTGGTCCTAGAATCCAAGGGAAGGGAATCCAGTG
GCTGTGGCTGAAGCAGACATGAGGTACACAAGCATCTTAGCTAAGCCTCT
AGGACGTTCAATGTTTGCAACTCAGCCAGGCAGATCAACTGGAGCCCACT
GTACCCCAGAAACACAGGAGCTAGAGGCACGGCTTGCTTAAAAGATGTCT
AAGCCGGGCGGCGGTGGCCAGCGCCTTTAATCCCAGCACTTGGGTGGCAG
AGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTT
CCAGGACAGCCAGGGCTATTCAGTACAGAGAAACCCTGTCTCGCAAAA
NCCCCACGATGCAGGGTAGCCGGGGGTCGCGGTTCTATCTGTGGTGACCT
AAGATTTCTCGAGGAGGGCTCANAAGAAGAAGAAGGATGTAAGCAAAGGG
GTTTCTGTCTCATCGTCAGCCTTGCCCAGAGCTCAGGGAAGGACAGCAGT
GACTCTGGCCGCGGCAGGGTCGGTCCCCAGGACTCCCCGAGGGGCCCGTT
CCCACCGACCCAATGTTTGGTTAGCGTTACCTTGCCTCCGTTCTTTCTCT
TTGTTCGCTTTTCCTTCCCGCCCCTCTCTTAATCATCTTTATTTTTCTTT
CCCTCGTCCTATTCTTTTCCACGTCCTCCCTTCCGCCCCACCTTGTCTTC
TTTTTTTTTTTTTTCCTTCTCCTCCCCCCTCCCCCTTTCTTCTCCTGTTC
TCGCTTCGTTTCTCGTTGTTTTTCCGCCTTCACAAATTTCCCTACTTCTT
CCTCTGTCGTCCCTCCTCTTCTTTCTTCCCTCTTTCTCTCCTCCTCTTTT
TTGTTTTTCTTTCTTTCGCCCCACCGCAATTATTCTCTTCGTTTCGTTTC
CCCTTACCCTCGCCGCTGTCTTTTTTTTTTCTTTTCCTTCTCCTTACCCG
AACCACTATTTTCCCCCGCCCCCTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_o05.b1 MSMg01no489_o05.b1 CHROMAT_FILE:
MSMg01no489_o05.b1 PHD_FILE: MSMg01no489_o05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:17 2005
         (563 letters)



>mm_chr2_179961308_179962270
          Length = 963

 Score = 1036 bits (536), Expect = 0.0
 Identities = 556/568 (97%), Gaps = 10/568 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcatccagggagggcagcttgtcttgacctcgcattttcaacggagactggggtcctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 agcatccagggagggcagcttgtcttgacctcgcattttcaacggagactggggtcctcc 661

                                                                       
Query: 61  cagccccttggggtttaagatttgtaggaggctgggggtttagtcaggagggcaggagaa 120
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 660 cagccccttggggtttaagatttgtaggaggctggggggttagtcaggagggcaggagga 601

                                                                       
Query: 121 tggtgcaaattttccagacaattacgggtcagaactgggccaggacatgatggcagtgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tggtgcaaattttccagacaattacgggtcagaactgggccaggacatgatggcagtgtt 541

                                                                       
Query: 181 tcaggaactcactgggacccttgggattatccagaaggaccagcaagaatgggagtccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tcaggaactcactgggacccttgggattatccagaaggaccagcaagaatgggagtccta 481

                                                                       
Query: 241 cc-----tttttacgtgagatggtggcctggctaggagataaggggagctgctagccctg 295
           ||          ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 cccaaaa-----acgtgagatggtggcctggctaggagataaggggagctgctagccctg 426

                                                                       
Query: 296 ctgctgagttcgacctctacacccctgggggctttcctgtttggtcctagaatccaaggg 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ctgctgagttcgacctctacacccctgggggctttcctgtttggtcctagaatccaaggg 366

                                                                       
Query: 356 aagggaatccagtggctgtggctgaagcagacatgaggtacacaagcatcttagctaagc 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aagggaatccagtggctgtggctgaagcagacatgaggtacacaagcatcttagctaagc 306

                                                                       
Query: 416 ctctaggacgttcaatgtttgcaactcagccaggcagatcaactggagcccactgtaccc 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctctaggacgttcaatgtttgcaactcagccaggcagatcaactggagcccactgtaccc 246

                                                                       
Query: 476 cagaaacacaggagctagaggcacggcttgcttaaaagatgtctaagccgggcggcggtg 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cagaaacacaggagctagaggcacggcttgcttaaaagatgtctaagccgggcggcggtg 186

                                       
Query: 536 gccagcgcctttaatcccagcacttggg 563
           ||||||||||||||||||||||||||||
Sbjct: 185 gccagcgcctttaatcccagcacttggg 158


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)