BAC Information

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BAC

Clone NameMSMg01-490I20
Chromosome2 (Build37)
Map Location 24,670,242 - 24,670,849
singlet/doubletsinglet
Overlap geneEhmt1
Upstream geneHnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938, Cacna1b
Downstream geneArrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490I20.T7 (MSMg01no490_i20.b1)MSMg01-490I20.TJ (MSMg01no490_i20.g1)
ACCAG568760AG568761
length835751
length of high quality
(start - end)		---608 (76 - 683)
definitionCHROMAT_FILE: MSMg01no490_i20.b1 PHD_FILE: MSMg01no490_i20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:10 2005CHROMAT_FILE: MSMg01no490_i20.g1 PHD_FILE: MSMg01no490_i20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAACTCTAAAATTGCGGCCGCAANANNAATCACAAATCANTATTTATC
CGCGNNAATTCCNNNGTTACAAACAAATGCACANANAAACCCNGNCNCAN
AAAACNNAACAAANANAAACAAAACACAACAAAACAAAAAAACACTGACT
GCTTCTTCAAAGNNNCNNATGNNAANTCCNCATCAACTTTNNNATTTANN
NNGNNATTTTACNCCTTTTCTNNGNNGTGGGGGAAAACGACTTTGTTGGA
GGAGAGTGAGGGTGTGTGGGGGGCTTTTGTTCTTTGATGCTGGGGGGGGT
GGGGTGTCGGGGGTTCTATATTTTTTTTTTTTCCCCCCTTTTTAAANGNC
TTTCAAAAAAAACCCCCCCCCCCNCCCCCAAAAATAAAACATACAAAAAC
CCTCTTTGTTGTAAANAAAAATTTAAANNNNNNANTTTAAANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAANNAAAAAAAANAAAAC
CCCCCACCACTCCCTCTGCTTTTTTTTCTCTCATATGTAAAAACTTAAAT
TATANAAAAANNNNNNNNNNNNTTTTTAAAAAANNATAACATATTTAATT
TTTTTTTGGTGTGTGGNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNN
NNNCCCCCCNCCCTCTTTTTTTTTTTTTTNCCCCNCCCCCCCCTCNCCCT
TCTCCCNCCTTCCCTNCCNCCCTCCCNTTTTTCCCCCCCCCCATCTCTCC
CCNCCNCCTCCCCCTTTTCCCTTTTTCTCCCCCTCTATCNCTTAATCCCT
ACTCTTAATATATTTGGTTTTTTGTTTTTTTTGTT

NCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGTCCTGACTTCCTTGGTGATGAA
CAGCAGTATGGAAGTGTAAGCCGAATAAACCCTTTCCTCCCCAACTTGCT
TGTTGGTCATGATGTTTGCGCAGGAATAGAAACCCTGACTAAGACACACA
GGGACATGAGGGAGATGGAAATGCAGCCTTAAACCAAGGATCAAAGGGCC
CTACAATGGTGTGTGGGACAGTCTTGGAGCCAGCTCTTTTAGATCATCTA
CTGGACTGACATGTATTTGTAGACACCTATTGTGTGCCTAGCACCAACAA
TGCAGCATAAATCACAGAACTGGTGACACAGCATCTTATGACTGATGGGG
GTGGGGTAGGTTAGCAAACAGCACACACAGTGCGATAGAGGGCAGTGCCA
AAGCACAGCCAGATCTAGGAAAGAGGCCTAGGTACCCTCAAGAAGGACAG
AAACCATTCTGGGTATGGGAGTTTGGGAGACTCTGAACAGACAGGAAGGA
AGCCTGACAGAATATCAAGAATGGATCCATTAGCCAAGTATTGCACAGAG
GCCCTACAAAGCAAGAGAATATGGGGATGAGGCCTGTGCTGGCCATTTTT
AGTCAACTTAATATAAGCTAGGGTCATCTGGGAAGAGTGAACCTCAAGTG
AGAAAACGCCTCTGTCAGAGGTTGTATAAACAAGTCTGTGGGGCATTTTC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_i20.g1 MSMg01no490_i20.g1 CHROMAT_FILE:
MSMg01no490_i20.g1 PHD_FILE: MSMg01no490_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:10 2005
         (608 letters)



>mm_chr2_24670042_24671049
          Length = 1008

 Score = 1083 bits (560), Expect = 0.0
 Identities = 596/608 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtcctgacttccttggtgatgaacagcagtatggaagtgtaagccgaataaacccttt 60
           |||||| ||||||||||||||||||||||| | ||||||||||||| |||||||||||||
Sbjct: 201 cagtccagacttccttggtgatgaacagcaatgtggaagtgtaagctgaataaacccttt 260

                                                                       
Query: 61  cctccccaacttgcttgttggtcatgatgtttgcgcaggaatagaaaccctgactaagac 120
           |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 cctccccaacttgcttcttggtcatgatgtttgtgcaggaatagaaaccctgactaagac 320

                                                                       
Query: 121 acacagggacatgagggagatggaaatgcagccttaaaccaaggatcaaagggccctaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacagggacatgagggagatggaaatgcagccttaaaccaaggatcaaagggccctaca 380

                                                                       
Query: 181 atggtgtgtgggacagtcttggagccagctcttttagatcatctactggactgacatgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggtgtgtgggacagtcttggagccagctcttttagatcatctactggactgacatgta 440

                                                                       
Query: 241 tttgtagacacctattgtgtgcctagcaccaacaatgcagcataaatcacagaactggtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgtagacacctattgtgtgcctagcaccaacaatgcagcataaatcacagaactggtg 500

                                                                       
Query: 301 acacagcatcttatgactgatgggggtggggtaggttagcaaacagcacacacagtgcga 360
           | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 aaacagcatcttatgactgatgggggtggggtgggttagcaaacagcacacacagtgcga 560

                                                                       
Query: 361 tagagggcagtgccaaagcacagccagatctaggaaagaggcctaggtaccctcaagaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagagggcagtgccaaagcacagccagatctaggaaagaggcctaggtaccctcaagaag 620

                                                                       
Query: 421 gacagaaaccattctgggtatgggagtttgggagactctgaacagacaggaaggaagcct 480
           ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 gacagaagccattctgggtatgggagtttgggaggctctgaacagacaggaaggaagcct 680

                                                                       
Query: 481 gacagaatatcaagaatggatccattagccaagtattgcacagaggccctacaaagcaag 540
           |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacagaatatcaaggatggaaccattagccaagtattgcacagaggccctacaaagcaag 740

                                                                       
Query: 541 agaatatggggatgaggcctgtgctggccatttttagtcaacttaatataagctagggtc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agaatatggggatgaggcctgtgctggccatttttagtcaacttaatataagctagggtc 800

                   
Query: 601 atctggga 608
           ||||||||
Sbjct: 801 atctggga 808


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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