Query= MSMg01no490_l12.b1 MSMg01no490_l12.b1 CHROMAT_FILE:
MSMg01no490_l12.b1 PHD_FILE: MSMg01no490_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:23 2005
(659 letters)
>mm_chr2_70671678_70672737
Length = 1060
Score = 911 bits (471), Expect = 0.0
Identities = 507/525 (96%), Gaps = 11/525 (2%)
Strand = Plus / Minus
Query: 146 ctgtaactctccttcagaggatctgacgtactcttctggcctctgagaggccaggcacac 205
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 1060 ctgtaactctccttcagaggatctgacatactcttctggcctctgagaggccaggcacgc 1001
Query: 206 aagtggtgcacccacatacatgcaaagaaaacagccatatacataccatgcaaatacaaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 aagtggtgcacccacatacatgcaaagaaaacagccatatacataccatgcaaatacaaa 941
Query: 266 gtaaaacaaaaattaaatatgatgtaataatatataataaataatatttagtgtattgca 325
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 gtaaaacaaaaaataaatatgatgtaataatatataataaataatatttagtgtattgca 881
Query: 326 tattatataa----------ataccacttcattctgactgtattattagcactttaggct 375
|||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 tattatataaatacgacgttataccacttcattctgactgtattattagcactttaggct 821
Query: 376 tagcaccatcaagtcacttctcatcattagtgtcttacacatctccatcaactctttcca 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 tagcaccatcaagtcacttctcatcattagtgtcttacacatctccatcaactctttcca 761
Query: 436 acaccaatcttccaaatcatgagttctttttctgattcagtgagtcacgctgttgtgatt 495
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 acacgaatcttccaaatcatgagttctttttctgattcagtgagtcacgctgttgtgatt 701
Query: 496 catcgcattatgtcaaacccatgggagaatgttcctgatacatttttttt-aatcactaa 554
|||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||
Sbjct: 700 catcgcattatgtcaaacccatggaagaatgttcctgatacgtttttttttaatcactaa 641
Query: 555 taaaactaatgctttgtttaacttaatgagaaggtttcttttctgtattttgagtagttc 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 taaaactaatgctttgtttaacttaatgagaaggtttcttttctgtattttgagtagttc 581
Query: 615 agcggcttagtttcgggaaaggaaactgtatctctccactcttgt 659
||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 580 agcggcttagtttcgggaaaggaaactctatctctccactcttgt 536
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1060
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1050
Effective search space: 681450
Effective search space used: 681450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no490_l12.g1 MSMg01no490_l12.g1 CHROMAT_FILE:
MSMg01no490_l12.g1 PHD_FILE: MSMg01no490_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:23 2005
(670 letters)
>mm_chr2_70651049_70652118
Length = 1070
Score = 1270 bits (657), Expect = 0.0
Identities = 666/669 (99%)
Strand = Plus / Plus
Query: 1 aataaaggtagaaaatataacagtatgtaaaaggaaaaacatgaggaaggaactgtttcc 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataaaggtagaaaatataaaagtatgtaaaaggaaaaacatgaggaaggaactgtttcc 260
Query: 61 atctgatgaagcaaggggtgacatcaataccatttattctaatgtctgagatacaggtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctgatgaagcaaggggtgacatcaataccatttattctaatgtctgagatacaggtgt 320
Query: 121 taagaaaagctgataacaggattttgatagaaatatcaattaaacccaatctcaatagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagaaaagctgataacaggattttgatagaaatatcaattaaacccaatctcaatagtg 380
Query: 181 attaagatctaccacctgaaacaagataacatttagcagcagttaaacttcccttctcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attaagatctaccacctgaaacaagataacatttagcagcagttaaacttcccttctcta 440
Query: 241 gagggcattttgttcagacctctgcaacagaagttcaattactgtcctccccactctgtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagggcattttgttcagacctctgcaacagaagttcaattactgtcctccccactctgtt 500
Query: 301 ttaaagaagtgaacttgccttcctgggaagggctgggcctcctcaatcccagctgtccta 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 ttaaagaagtgaacttgccttcctgggaagggctgggcgtcctcaatcccagctgtccta 560
Query: 361 acttgactgtaggcactagccagccctacatcctacttatcattttttgcttaagtttat 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 acttgactgtaggcactagccagccctacatcctactcatcattttttgcttaagtttat 620
Query: 421 tttgagcaaccaaataactgatgaatgtaacagtttgctataacacataccattattaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttgagcaaccaaataactgatgaatgtaacagtttgctataacacataccattattaca 680
Query: 481 tatgaattcatgtttacaacagaagtcaacattggtaactcacagattatccagcccgcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatgaattcatgtttacaacagaagtcaacattggtaactcacagattatccagcccgcc 740
Query: 541 tttgcaagtcagtcttccttattagatgctgcatccaagttcctcaaggacaggactgac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttgcaagtcagtcttccttattagatgctgcatccaagttcctcaaggacaggactgac 800
Query: 601 tcagacgcaccttttctcagaactaggctccagcgtgaaaactacttgttaataaattaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcagacgcaccttttctcagaactaggctccagcgtgaaaactacttgttaataaattaa 860
Query: 661 aagtatata 669
|||||||||
Sbjct: 861 aagtatata 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
