AAAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXTATTCAAGATGAGGCG
CGGAATTCAGACTATTCTGTTTTGACCCACTGAATAATTTCTATGGACTA
AGTTCTCAGATGTATGGAAATATTTCCATTAAAAAGTAGGTGTAAATGTT
TTTATTCTCTCTGGCTGTGCCTTTTATATTTCTTTCTGAAATGATTTGCT
TGGCAATGCTAACATTACAATATACTAGCCATGTGCTAGTAGTGTAGCTC
AGTGGTAGAGCACCTGCCCAGCATGCAGGAAGCTACAGGTTGAACCAGGC
AGTGAAAAAAATGTCCAGTTCTCAATGCTAAAAGAGACAGGTCTCTAAAT
GTCCAGTAGAAAAAGGGGCAGCCACACGGCCACAAGGTCCCTTCTCCAGG
CCCTGTTAGTTTCTAGAGAAATGACTCATTTGATTAGGATCTTGCTATAT
AAGACCAGAGTTTAGAACTCTAGTTCTTAGACACAATCTAGCATTTTCCA
TACTGTTTCTTGATAAGAGGCATTGAAGTTATTGCCATTTTGTTCTTCAT
GTAAATTATGTTGTTTGTTAAGTGTAAATTTTTGTAAATGTAAATTTTTG
TAAATTATGTTGTTTGTTAACCTCACAAATGGTAATGACCAGACTTTAGT
CTAATTTCTTAGCTTTGGGATCTAACAGTGGCATTTTCATCATCAAAGAA
AACAAAATCTGCCTTGTGCAGTCATCTAAGGTTCTTATCTGCACTACCAG
CACTTGTG

NNNNAACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTCCCAAAATTCATCCCTTCAGAATTGTTATAT
TTTGATGATTTATAATGATGTTACCTGTTCTGTTTGTGATTCACTGAATA
CATAGTTTCAGAGTTGTAATGCTTGGATGATTTTTGTGCTTTACTGTGCC
AAATGATTTTTGTTGATATCTGTGATTGTTTCATTGGATATAGTTTCTAA
GAGATGTAATGTTTGGTTTTTTTAATGTATAAAATCCCCTGCTTGAGAGC
TGCAGAATACACTCAGATTCAAACTGGCTTTTTATTTGTTTCTGTTTGTC
ACTGCCAAATCCTTACCCACCTAGCTTCAAGGACCCTCATTCCAGGGACC
CCCATACCTGATTGGGGTGGTCCGTGGCAGGTTTCCTGTAGGAAGGTCTC
TCAATGACTTACTGTATCCACCCTGACTGCATCAGCTCTTGGATCAGGTA
AAGCCTTTGGGTGGTTTCTTCCTGGAGAAAATCTCTTTTGAACAGCCTTG
AGCTCTCTACATCCAAGTGCCTGGACCCATATCTTTCAGCAAATTGTGAC
TTCAGTTTACTGTGTTATCCTGAGCCCACTCCTACACCTGGGAAATGTAC
CAGGACAGATAAACAAGGTGTTTTTCTCTCTCTCTTATCACTGCTTCAGA
GTAGACAGTCAGTGGGCATTTTGGAATATGAAAAATATCTN

Query= MSMg01no490_n24.b1 MSMg01no490_n24.b1 CHROMAT_FILE:
MSMg01no490_n24.b1 PHD_FILE: MSMg01no490_n24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:35 2005
         (680 letters)



>mm_chr2_14748075_14749154
          Length = 1080

 Score = 1292 bits (668), Expect = 0.0
 Identities = 677/680 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgaataatttctatggactaagttctcagatgtatggaaatatttccattaaaaagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgaataatttctatggactaagttctcagatgtatggaaatatttccattaaaaagta 260

                                                                       
Query: 61  ggtgtaaatgtttttattctctctggctgtgccttttatatttctttctgaaatgatttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgtaaatgtttttattctctctggctgtgccttttatatttctttctgaaatgatttg 320

                                                                       
Query: 121 cttggcaatgctaacattacaatatactagccatgtgctagtagtgtagctcagtggtag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttggcaatgctaacattacaatatactagccatgtgctagtagtgtagctcagtggtag 380

                                                                       
Query: 181 agcacctgcccagcatgcaggaagctacaggttgaaccaggcagtgaaaaaaatgtccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcacctgcccagcatgcaggaagctacaggttgaaccaggcagtgaaaaaaatgtccag 440

                                                                       
Query: 241 ttctcaatgctaaaagagacaggtctctaaatgtccagtagaaaaaggggcagccacacg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctcaatgctaaaagagacaggtctctaaatgtccagtagaaaaaggggcagccacacg 500

                                                                       
Query: 301 gccacaaggtcccttctccaggccctgttagtttctagagaaatgactcatttgattagg 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 gccacaaggtcccttctccaggccctgttagtttctagagaaatgattcatttgattagg 560

                                                                       
Query: 361 atcttgctatataagaccagagtttagaactctagttcttagacacaatctagcattttc 420
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 atcttgctatataagaccagagtttagacctctagttcttagacacaatctagcattttc 620

                                                                       
Query: 421 catactgtttcttgataagaggcattgaagttattgccattttgttcttcatgtaaatta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catactgtttcttgataagaggcattgaagttattgccattttgttcttcatgtaaatta 680

                                                                       
Query: 481 tgttgtttgttaagtgtaaatttttgtaaatgtaaatttttgtaaattatgttgtttgtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgttgtttgttaagtgtaaatttttgtaaatgtaaatttttgtaaattatgttgtttgtt 740

                                                                       
Query: 541 aacctcacaaatggtaatgaccagactttagtctaatttcttagctttgggatctaacag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aacctcacaaatggtaatgaccagactttagtctaatttcttagctttgggatctaacag 800

                                                                       
Query: 601 tggcattttcatcatcaaagaaaacaaaatctgccttgtgcagtcatctaaggttcttat 660
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 801 tggcattttcatcatcaaagaaaacaaaatctgccttgtgcagtcatctaagattcttat 860

                               
Query: 661 ctgcactaccagcacttgtg 680
           ||||||||||||||||||||
Sbjct: 861 ctgcactaccagcacttgtg 880


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)