BAC Information

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BAC

Clone NameMSMg01-491F20
Chromosome2 (Build37)
Map Location 180,468,581 - 180,468,828
singlet/doubletsinglet
Overlap gene1700019H03Rik
Upstream geneCdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik
Downstream geneBhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491F20.T7 (MSMg01no491_f20.b1)MSMg01-491F20.TJ (MSMg01no491_f20.g1)
ACCAG569376AG569377
length747756
length of high quality
(start - end)		645 (36 - 680)248 (64 - 311)
definitionCHROMAT_FILE: MSMg01no491_f20.b1 PHD_FILE: MSMg01no491_f20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:15 2005CHROMAT_FILE: MSMg01no491_f20.g1 PHD_FILE: MSMg01no491_f20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTAGA
ATTTATCAGTAATTATTAAGCTCTTTTATAGTAGGACTGCTATTAATGTC
CTTTCTGGTATGAAAACTGCAATGAGAACTCTGCCAGTCTTCAAGTGTCA
CCAGTTAATTGCTTCTGAGATAGAAAGGAGATATCTGCAACTAAGAGCAC
ATTCCAGGAAATTGTAAAACCATTAACCAGAGGTCATAAAAAGGGAAGTA
AGGATTTACTATAGATGCTAGGACAAAAGATAAAATATTGACTGGGATCA
TCTATACAAAACTTCACTTTTAATTTAGCCACAAAAGTTATGGTCTTTAA
CTCTCCATGAACCTGAAGAGCTGGTGACAGATGATGAATGTTTAGCCAGA
TAATCACTCTTAATGGATATATCTGTAAACATTCTTGCTCAATTTATGAT
TTGAATTTATGTTTGAACTTCTAGTGAAGTTTTGTAAAAGAAAAAAAGGG
GGGATTTTTGTAAAACAAAAACAAAAACATGTGATCTATTCCAGGAAAGG
TTAAAAAAGACTAAGAAAGATGACATTAAGGACATCAGAGCAGGAGGAGA
GAGCAAGATTAGAAGGAGAACACAGAGTAGAATAACTTGGAAATTATAAG
GCAACTTAAAATATTAAGAGAGCAATGCGCAGAATGCAGAGGGGAAAGGG
AAAAAAGAAGCTGCAGAGAGAGCAGGAGAACAGGCAGGCTTCTACTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXACTCACCTGGAACCAGGTTGGCTTCGAAATCACAAAG
ATCCACCTGCCTCTGCCTCCCGAGTGCTGAGATTCAAGGTGTGCACTATC
ATCACCTGACAAACCCTTTCTTCTTAATCTGTTTCTTGTCATTGTTTTGT
CACAGCAGCAACAGCAGATAAAACACTGTCACAAACGCAGCAGGTTTGAG
GAACAGCTTTGGAACCTAGCATTAGTCTACATCTCTACTCGGACCATCAC
TGCTGGACTAGAATTATGGTCCTTGAGAGCTCAGGGAAGTTTCCTGAATG
CAAAGGGGGTGGAGCCTTACCCGACCTGGGAGCCAGCACCCACAGTGCTG
TAGGTAAAGGCTCTCTCGCTCTCCTGTACTTTCTGGGACAGCAGACTGGT
CAGGGCTGGAAAGTAGACACCTACAACAATCAGAGATTACTGTCACAGAG
TACCCAGTGACAGCAAGGGAGGGCTAAAGCTTGGCTTCCTTTCTGTGACC
TCACTGAGCTTTAGGGGATCAGCAGGGCTGGGCTTTTGGCAATTTTGGGG
TAATGAACCAAACTAATTTAGAATGAGCGTTATACAGAGCGATGTAAAAC
ATCCCCGGGAGAGCTTCTGCTTCAAGGCAAAATGCCTCTACCCCAAGACA
TAACACCCTGCAGCCAGATCGCTGTGCGTGCAACCTAAAAACACACGCCC
CACCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_f20.g1 MSMg01no491_f20.g1 CHROMAT_FILE:
MSMg01no491_f20.g1 PHD_FILE: MSMg01no491_f20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:16 2005
         (248 letters)



>mm_chr2_180468233_180468880
          Length = 648

 Score =  472 bits (244), Expect = e-138
 Identities = 247/248 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcacctggaaccaggttggcttcgaaatcacaaagatccacctgcctctgcctcccga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 actcacctggaaccaggttggcttcgaaatcacaaagatccacctgcctctgcctcccga 537

                                                                       
Query: 61  gtgctgagattcaaggtgtgcactatcatcacctgacaaaccctttcttcttaatctgtt 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 536 gtgctgagattcaaggtgtgcactatcatcacctgacaaatcctttcttcttaatctgtt 477

                                                                       
Query: 121 tcttgtcattgttttgtcacagcagcaacagcagataaaacactgtcacaaacgcagcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tcttgtcattgttttgtcacagcagcaacagcagataaaacactgtcacaaacgcagcag 417

                                                                       
Query: 181 gtttgaggaacagctttggaacctagcattagtctacatctctactcggaccatcactgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gtttgaggaacagctttggaacctagcattagtctacatctctactcggaccatcactgc 357

                   
Query: 241 tggactag 248
           ||||||||
Sbjct: 356 tggactag 349


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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