BAC Information

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BAC

Clone NameMSMg01-491K21
Chromosome2 (Build37)
Map Location 146,463,144 - 146,463,668
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc24a3, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik
Downstream geneLOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491K21.T7 (MSMg01no491_k21.b1)MSMg01-491K21.TJ (MSMg01no491_k21.g1)
ACCAG569617AG569618
length733769
length of high quality
(start - end)
155 (156 - 310)525 (68 - 592)
definitionCHROMAT_FILE: MSMg01no491_k21.b1 PHD_FILE: MSMg01no491_k21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:40 2005CHROMAT_FILE: MSMg01no491_k21.g1 PHD_FILE: MSMg01no491_k21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCCGCTCGACGACTCACCATAGTTCTNAACCCCGACNGAANNCNGN
GGNAGTTTCCCCAGCGAGAGCCCCACAGANGCAAANNNGAAGGCNNAGGG
AGGGGNATATTGACCCGAGAACAAGNNGGAGGAAGNANGNCACNNGAGGA
AGGACTTTGAGGTTTCAAATGGTCAAGCTAGGCCTAATGTCTTTCTCTGT
CTTCCTGCTGCCTGCCAATCCAGATGAAGAGCTCTCAGCTCCTTTGTTTT
CACCAGGTCTGCCTCTCCAATACCATGCTTCCTATCATGACAATAATCAC
TGAACCTGTAAGTTTTTTTTTTGAAANGNNNNCCNNNANAAGAGNNNCNG
NGGTCATCACCCCCCCCCAGAGCAGAAGAAACNCNAAGACAAACGGAGAG
AGGGAGCCCCCACCNAAANAAACNNNNNCCNCNCCAAGNAGCNNNGGGNC
ANAGGGNNNCACCACAGCAANAGNAACCCNGACNAAGACACCGGAAGAAG
GCNNNGCCACANGCNGGGGGCACCGGNANCGCAGACACGGCNGAGNCCAC
GCCAACAANACACAACCANACAGGACCNCCCNCANCCANANACAACCACN
CAGGACCCCNAACANCCANNACCCAACAACCCAGGCNACCACCANAGCCC
TAGTTTTTATTTCCCNAAGGACAGCACAACAAAACCTGTGGTAGGAATCA
TGATGTTGGAGGAGGGCGCAAAGTCACACTCAT
GTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTCTGAAATACCCCTGTCTCTTTTTTTGTTCCTTTCTGCTCTAC
AGCAGTAAGTATGTGGGGGTCTCGGAGGTTGAGTCTCTGCAGCATCATCT
AACTGGTATGACCATCTACAGAAGCCTGCTCTTCTGTAGCAGAGGATTGT
GGGTACTTCTTTCTTCTTGCTCTCATCTTCTGGACCGGGTGGGAGGGGAG
CAGTTGGCTGGAGATTAGGTTACTATCAGAGTTGGCATGCTTCTGTGTGA
TGAGAGCTAAGAGGATTTTTTTAAAACAGGGAAGGGGAACCCAGAGGAGA
TTGTTTCAGGGTGTGCGATGTGCTCCCATATCAAAAAGGTCCTGGGCACT
GCTGTGAGCTTTGCATTATTTCCTGAAGGTGGGGATGTTGGAGCTTGGAT
GGGCTTCGTGGCTTATGAGCAGGACCGTCCTAGTCTTCTGACAAGCTCGG
TTGCTAAATGAGAATCAAAGTCTGAAACAGCAGTGGGTCTGACTTTCTCT
CTCTCCTTAAAAAAAAATCATAACAGTAAGCATGAACTCATTCAAACTGT
TAGAGAAAACAAACAAACCAACAAATGAAAAAATATGGGCTCAGTTTTGC
CCTCTAGGAAAACGTTGAGGAAAAAAACTTAGTAAAATTACATTTCTAAA
GGGGTCCGAATGTCTGCTCTTCTACCCTTAGAACAAGAGTCATCTATGCT
TGGGGTTGTATGCCTGTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_k21.g1 MSMg01no491_k21.g1 CHROMAT_FILE:
MSMg01no491_k21.g1 PHD_FILE: MSMg01no491_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:40 2005
         (525 letters)



>mm_chr2_146462944_146463868
          Length = 925

 Score =  959 bits (496), Expect = 0.0
 Identities = 517/532 (97%), Gaps = 14/532 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccctgtctctttttttgttcctttctgctctacagcagtaagtatgtgggggtctcggag 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 ccctgtctctttttttgttcctttctgctctacagcagtaagtaggtgggggtctcggag 260

                                                                       
Query: 61  gttgagtctctgcagcatcatctaactggtatgaccatctacagaagcctgctcttctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgagtctctgcagcatcatctaactggtatgaccatctacagaagcctgctcttctgt 320

                                                                       
Query: 121 agcagaggattgtgggtacttctttcttcttgctctcatcttctggaccgggtgggaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcagaggattgtgggtacttctttcttcttgctctcatcttctggaccgggtgggaggg 380

                                                                       
Query: 181 gagcagttggctggagattaggttactatcagagttggcatgcttctgtgtgatgagagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagcagttggctggagattaggttactatcagagttggcatgcttctgtgtgatgagagc 440

                                                                       
Query: 241 taagaggattttttt-------aaaacagggaaggggaacccagaggagattgtttcagg 293
           ||||||||              ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taagagga-------ggaggggaaaacagggaaggggaacccagaggagattgtttcagg 493

                                                                       
Query: 294 gtgtgcgatgtgctcccatatcaaaaaggtcctgggcactgctgtgagctttgcattatt 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gtgtgcgatgtgctcccatatcaaaaaggtcctgggcactgctgtgagctttgcattatt 553

                                                                       
Query: 354 tcctgaaggtggggatgttggagcttggatgggcttcgtggcttatgagcaggaccgtcc 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tcctgaaggtggggatgttggagcttggatgggcttcgtggcttatgagcaggaccgtcc 613

                                                                       
Query: 414 tagtcttctgacaagctcggttgctaaatgagaatcaaagtctgaaacagcagtgggtct 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tagtcttctgacaagctcggttgctaaatgagaatcaaagtctgaaacagcagtgggtct 673

                                                               
Query: 474 gactttctctctctccttaaaaaaaaatcataacagtaagcatgaactcatt 525
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gactttctctctctccttaaaaaaaaatcataacagtaagcatgaactcatt 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)