Query= MSMg01no491_l23.b1 MSMg01no491_l23.b1 CHROMAT_FILE:
MSMg01no491_l23.b1 PHD_FILE: MSMg01no491_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:45 2005
(689 letters)
>mm_chr2_93445194_93446282
Length = 1089
Score = 1243 bits (643), Expect = 0.0
Identities = 672/685 (98%), Gaps = 6/685 (0%)
Strand = Plus / Minus
Query: 5 gaattcattttctctccctcttcctctccctctccctcttcctctctcctcctccctatc 64
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 948 gaattcattttctctccctcttcctctccctctc------cctctctcctcctccctatc 895
Query: 65 cctctatgtacagaaaaccacaagggtctttctcatatagcattattcttcattctttaa 124
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 894 cctctatgtacagaaaaccacaagggtctttctcatatagcattattctgcattctttaa 835
Query: 125 aaataagcctttgccttttttgcttcctaaagaaacaggcacctcagaaagagaagagca 184
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 834 aaataagtctttgccttttttgcttcctaaagaaacaggcacctctgaaagagaagagca 775
Query: 185 ttagaagaaaaaagccatcacgtctgctctccccagactcctgcagtattgaccagcttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 ttagaagaaaaaagccatcacgtctgctctccccagactcctgcagtattgaccagcttt 715
Query: 245 ccaccctgagtgtcagggcctgttttaggtgcaacggtgaactaatgcagatgtcccttg 304
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 714 ccaccctgagtgtcagggcctgttttaggtgtaagggtgaactaatgcagatgtcccttg 655
Query: 305 tgaccccacagagaatagatacagtgtctttgcaagactgtaagaagttccttgtatttt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tgaccccacagagaatagatacagtgtctttgcaagactgtaagaagttccttgtatttt 595
Query: 365 aaatcagaaaataagagtgaagaaggcaaacagctgggtggaaggccttagtgaggaggt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 aaatcagaaaataagagtgaagaaggcaaacagctgggtggaaggccttagtgaggaggt 535
Query: 425 ctggggaagtgttgctcaagaggtgaagatggaggcaggagaaaagcgtgtttaaatagg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ctggggaagtgttgctcaagaggtgaagatggaggcaggagaaaagcgtgtttaaatagg 475
Query: 485 aggaaacggctgtgcaaagggcctgtggcacaaggggcagattaaggttcagaagctgca 544
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aggaaacggccgtgcaaagggcctgtggcacaaggggcagattaaggttcagaagctgca 415
Query: 545 ggatcatctggcattagggctgtgtggactgctcacatttttgaatcttaagaacaaaga 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ggatcatctggcattagggctgtgtggactgctcacatttttgaatcttaagaacaaaga 355
Query: 605 aagtacttcaaagctcttttcaatgtgatgagtgtaattgaatttggacttgaattttgg 664
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 354 aagtacttcaaagctcttttcaatgggatgagtgtaattgaatttggacttgaattttgg 295
Query: 665 cgtgtatacatgtgcccatcagtta 689
|||||||||||||||||||||||||
Sbjct: 294 cgtgtatacatgtgcccatcagtta 270
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_l23.g1 MSMg01no491_l23.g1 CHROMAT_FILE:
MSMg01no491_l23.g1 PHD_FILE: MSMg01no491_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:45 2005
(546 letters)
>mm_chr2_93305858_93306803
Length = 946
Score = 1017 bits (526), Expect = 0.0
Identities = 541/546 (99%)
Strand = Plus / Plus
Query: 1 ctgccacacaagaggcactgtcttctgcactcctgctgaggttttctccaaaggcgctga 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgccacacaagaggcactgtctgctgcactcctgctgaggttttctccaaaggcgctga 260
Query: 61 catcctggggttctggtcctagtgtgcaggcctcgtttagcacaagaaacccaagcttag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcctggggttctggtcctagtgtgcaggcctcgtttagcacaagaaacccaagcttag 320
Query: 121 aatacagtttcgataagcatccttttatgctgagcaggtcacagaccagacaacaaaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatacagtttcgataagcatccttttatgctgagcaggtcacagaccagacaacaaaagg 380
Query: 181 ttcatcctcctgcctggccatcatccatccatcagcaagaccatgctccagtttggactt 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcatcctcctgcctgaccatcatccatccatcagcaagaccatgctccagtttggactt 440
Query: 241 cctggattctgcagcttcatgcaggagttagagcatgtgaggagatcagctcgggtccat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctggattctgcagcttcatgcaggagttagagcatgtgaggagatcagctcgggtccat 500
Query: 301 agctgggcccacccacctgcttctcttcctgtcctcagtgtcacaacaatacaggattca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agctgggcccacccacctgcttctcttcctgtcctcagtgtcacaacaatacaggattca 560
Query: 361 gtcgtgaggataccccagcccatctgctcattgctccacacagctactgcctccaggagt 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 gtcgtgaggataccccagcccatctgctcattgctccacacagctactgcctccagaagt 620
Query: 421 tgaacacctgtgacagagccaattacctagggatagaggagccaagaggcttgggttgcc 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaacacctgtgacagagccaattatctagggatagaggagccaagaggcttgggttgcc 680
Query: 481 ctggaggctgtatttgggccagctgaacagagactccccgtgtttctacacagaggcatg 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttgaggctgtatttgggccagctgaacagagactccccgtgtttctacacagaggcatg 740
Query: 541 gtcaag 546
||||||
Sbjct: 741 gtcaag 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
