BAC Information

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BAC

Clone NameMSMg01-492A03
Chromosome2 (Build37)
Map Location 111,947,391 - 111,947,723
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314
Downstream geneOlfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492A03.T7 (MSMg01no492_a03.b1)MSMg01-492A03.TJ (MSMg01no492_a03.g1)
ACCAG569867AG569868
length705710
length of high quality
(start - end)
657 (49 - 705)334 (88 - 421)
definitionCHROMAT_FILE: MSMg01no492_a03.b1 PHD_FILE: MSMg01no492_a03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:06 2005CHROMAT_FILE: MSMg01no492_a03.g1 PHD_FILE: MSMg01no492_a03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:07 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCATATGTACGTAACTTTTAAGTATCTGAAGATTCTCCATTT
GTCAGAAGAATTTACCAACTTGTTTCTAATACACAATGTAGCCTGTAGTG
AAGATTTCTATCTCAGTGGGATTCTCTGGCTCTATTATTCCCTTGTTTGG
GTGAGATTTGCTACTGTCCTTGGTAAATATTTTGCAGACCAGCTCTGAGC
TACTGGCTCCGACTTTTGTAATGCTTAATTAGTTACTGAATAGGTTAACT
TCCTTACTGCATTCTGTCGGATTCTAAGCTCATAGTTCCATACACCAGAC
TAACATGGGAATAGGGTATGAGTATACGGGTAAAGGAGAATGTCAAAGCT
CCAGGAGGTGAGTTTCCTTGAAACTCTTTTCCCCATGAGTGGCTCCCAGG
TTTTTCAGCCTGTCAAGCAGACCTGGCCGGAGTGCGTGGCATTTCCCAGT
GTACATGGCAGCATAGATGAGCTAGTCCAAGGCACATATACTGCAGAAGA
CTGCCCAGTCTGGCCTCAGTGGGAGAAGATGCACCTAAACCTCTAAAGAC
TTGAGACTCAAAGGAGTGGGTGGGGTAGGGAGAACATCCTCTTAGAGATG
GGGGAGGAGGAATAGTATGAGGAAATGTGTGGTAGCACAGACTGGGATGG
AACAA
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTCGTTTTGATAGCTTTATTAGTTCT
TATGGTCCTACATGAATACTTGTGTATAGCTGACTGTTAATATGTCTCCT
TCCCAGATTTTAACAAATTACTTGTACAATCTGAAAACTGTGGAAAGAAT
CTGCAGCCACCTATATTTAAAAAGACAATTACATATAAATGTAAAGCACA
AGTAAGGTATAGAAGAGTCTAAAAGAGAGGATGCTTTTCAATATAGAAAG
ATAGGGGACATGGATTACAGGCTATGATAAAAACATATTTGCCTTTATGA
ATCATGTCTTAATTTTAAAAATGAGAATAGATTCAAACACCGTGGATAAT
TAGAAATTATTGTAAAAACCGACAATAGGAGGCAACGATGTTTGCTTCTA
TGAAGGATTCTGTGGCTTCAAATATTTAGGTGCTTTTGCTCATACTGAAA
TTAGGATGTTAGCACGCACAGTTAGGCATAGCTTTTGCCCTATCTAAAAT
TAAACAGGTAATAAGTACAGAAACAAGCATCACCGACAAAATACAAGAAA
TGGGAGAGAAAATCTCAGATGCACAATATACAATTGAAGAAATCAATACT
TTGGTCTAAAATGTTCCTGACATAAAACATCTAATACAAAATCTAGGACA
TCATAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_a03.g1 MSMg01no492_a03.g1 CHROMAT_FILE:
MSMg01no492_a03.g1 PHD_FILE: MSMg01no492_a03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:07 2005
         (334 letters)



>mm_chr2_111947191_111947924
          Length = 734

 Score =  605 bits (313), Expect = e-177
 Identities = 328/333 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttattagttcttatggtcctacatgaatacttgtgtatagctgactgttaatatgtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ctttattagttcttatggtcctacatgaatacttgtgtatagctgactgttaatatgtct 474

                                                                       
Query: 61  ccttcccagattttaacaaattacttgtacaatctgaaaactgtggaaagaatctgcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 473 ccttcccagattttaacaaattacttgtacaatctgaaaactgtggaaagaatgtgcagc 414

                                                                       
Query: 121 cacctatatttaaaaagacaattacatataaatgtaaagcacaagtaaggtatagaagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 cacctatatttaaaaagacaattacatataaatgtaaagcacaagtaaggtatagaagag 354

                                                                       
Query: 181 tctaaaagagaggatgcttttcaatatagaaagataggggacatggattacaggctatga 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 353 tctaaaagagaggatgcttttcaatatagaaaggtaggggacatggattacaggctatga 294

                                                                       
Query: 241 taaaaacatatttgcctttatgaatcatgtcttaattttaaaaatgagaatagattcaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 293 taaaaacatatttgcctttatgaatcatgtcttaattttaaaaatgagaatagatccaaa 234

                                            
Query: 301 caccgtggataattagaaattattgtaaaaacc 333
           ||||||| |||||||||||||||| ||||||||
Sbjct: 233 caccgtgtataattagaaattattttaaaaacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)