Query= MSMg01no492_d04.b1 MSMg01no492_d04.b1 CHROMAT_FILE:
MSMg01no492_d04.b1 PHD_FILE: MSMg01no492_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:21 2005
(526 letters)
>mm_chr2_161497614_161498533
Length = 920
Score = 944 bits (488), Expect = 0.0
Identities = 514/526 (97%), Gaps = 6/526 (1%)
Strand = Plus / Minus
Query: 1 acaattttattaagcctataaaccaaattgagcctcaaaactaaagaagggtagctttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 acaattttattaagcctataaaccaaattgagcctcaaaactaaagaagggtagctttgt 661
Query: 61 ttcagaaaacaccttagcaacaacgtgctaaaaagaaatagagcaaagccaagagaatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ttcagaaaacaccttagcaacaacgtgctaaaaagaaatagagcaaagccaagagaatct 601
Query: 121 ttgtagtttgttctttcttccccacaccatttatcatctgggcatcaacaggataagaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ttgtagtttgttctttcttccccacaccatttatcatctgggcatcaacaggataagaag 541
Query: 181 aaaccttctcataaaaaaaaaaatctaatctcagatctaagctatgggaatagaatttta 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 agaccttctcataaaaaaaaaaatctaatctcagatctaagctatgggaatagaatttta 481
Query: 241 ggctatattttttcttccttatcttttctaaacacaaaaggttccatgaaggagtgggac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ggctatattttttcttccttatcttttctaaacacaaaaggttccatgaaggagtgggac 421
Query: 301 ttaaggtgttggtttactttgcttgttttgtttctgtttgttttttttttaatagaagac 360
||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 420 ttaaggtgttgttttactttgcttgttttgtttctgttt------tttttaatagaagac 367
Query: 361 ttcacggtggatactttgaccatattaacatggatatgttcccaagtcactaggatgggg 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ttcacggtggatattttgaccatattaacatggatatgttcccaagtcactaggatgggg 307
Query: 421 aaggagaatatgcttagtatatgatacttctataatcttatctctcgtcatttaaggatg 480
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 306 aaggagaatatgcttagtatattatacttctataatcttatctctcttcatttaaggatg 247
Query: 481 ttgaatgctgggtttgtttggacctgtgaggagactaataatcaca 526
||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 246 ttgaatgctggttttgtttggacctgtgaggagactaataatcaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 920
Length adjustment: 10
Effective length of query: 516
Effective length of database: 910
Effective search space: 469560
Effective search space used: 469560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no492_d04.g1 MSMg01no492_d04.g1 CHROMAT_FILE:
MSMg01no492_d04.g1 PHD_FILE: MSMg01no492_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:21 2005
(639 letters)
>mm_chr2_161423952_161424988
Length = 1037
Score = 1170 bits (605), Expect = 0.0
Identities = 630/639 (98%), Gaps = 2/639 (0%)
Strand = Plus / Plus
Query: 1 ctctccctctagatcctccaatagcatttgtttccttccttaaaataaaaacttatgttt 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcttcctctagatcctccaatagcatttgtttccttccttaaaataaaaacttatgttt 260
Query: 61 atgtatgttttgcctacatgtatatatatatcatatccatgcctggtacccacagatgcc 120
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 atgtatgttttgcctacatgtatatatat--catatccatgcctggtacccacagatgcc 318
Query: 121 ctggtactggaggttatgtgggttctaaagaattgatcccaggtgttctgcaagaacagt 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 319 ctggtactggaggttatgtgggttctaaagaattgatcccaggtgttctacaagaacagt 378
Query: 181 tagtgttcttaactgtcaagatattgctccacccccacctctgtttcttgccatttgata 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aagtgttcttaactgtcaagatattgctccacccccacctctgtttcttgccatttgata 438
Query: 241 acagtaattctaactggggtaggcacattttggttttgatttgcattttggatatagcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 acagtaattctaactggggtaggcacattttggttttgatttgcattttggatatagcta 498
Query: 301 ttgctaattgcttaaaaatttccagtacttcctagtacaattaaacatttcacatttgta 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttgctaattgcttaaaattttccagtacttcctagtacaattaaacatttcacatttgta 558
Query: 361 tgttgctttccagatgtttgagggggaaaagcctaagactttgtccttattttcaagtct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgttgctttccagatgtttgagggggaaaagcctaagactttgtccttattttcaagtct 618
Query: 421 ggtggagagccttgtaccatcacctctatatccttccagctccaaggtagcagatgtctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ggtggagagccttgtaccatcacctctatatccttccagctccaaggtagcagatgtctc 678
Query: 481 ctctgcccatctccaagcccattttctgttatacataccacacatgagcatctaggaggc 540
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 679 ctctgcccatctccaagcccattctctgttatacataccacacatgagcatctaggaggc 738
Query: 541 tgtttctgggccaacgactctttccttaacgtcagaagggatggtgacgttgtgggagat 600
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 739 cgtttctgggccaacgactctttccttaacgtcagaagggatggtgacattgtgggagat 798
Query: 601 gatgattataaccttgtgtattccagtagtggggacaga 639
|||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gatgattataaccttgtgtattccagtagtggggacaga 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1037
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1027
Effective search space: 645983
Effective search space used: 645983
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
