BAC Information

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BAC

Clone NameMSMg01-492H09
Chromosome2 (Build37)
Map Location 59,292,457 - 59,292,914
singlet/doubletsinglet
Overlap genenone
Upstream geneAcvr1, LOC674940, Upp2, BC062650, Pkp4, LOC625354
Downstream gene2310032F03Rik, LOC100038999, LOC100039016, Tanc1, Wdsub1, Baz2b, LOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492H09.T7 (MSMg01no492_h09.b1)MSMg01-492H09.TJ (MSMg01no492_h09.g1)
ACCAG570211AG570212
length772726
length of high quality
(start - end)
---560 (73 - 632)
definitionCHROMAT_FILE: MSMg01no492_h09.b1 PHD_FILE: MSMg01no492_h09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:42 2005CHROMAT_FILE: MSMg01no492_h09.g1 PHD_FILE: MSMg01no492_h09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATAATTTGTGGTCGCAAAGAGAGNACTTCTGCCAGAGGAGCCGCGGCAA
TCAACTCTCTCCCTCCAGCAATGGACAGATCATGGAAACAGAAACTTATC
AAAGTCACAGTGAAACTAACAGAAGCTATGAACTACATGGATCTAACAAA
TGTTTGTAGAACATTTCATCCTAAAGTAACAGAATATACCTTCTTCTCAG
CACCTCACGGTACCTTCTCCAAAATTCGCCACATAATTGATCTCAAAACA
GGCCTCAAGAGATACAAGAAGATTGAAATTATCCCATGCATCCTATCAGA
TTACCTCTTTTTTAGGTTGCTCTTTAATACCAACCAGACACCACAGAAAA
CATATATATACATGGTAAACTGAACACTCTATTTAATGATAACTCGGTCA
AGGAAGAAATAAATTAACACGTTTCTTAGAATTTATTCGAAACTTGAAAC
CTATTATTGTCCCAAATTCATGGGAACACTTTGCAAAGTATTGCTCCGAA
GAAAACTTCCTTATGCCTTCCTAAAAGAAAACTGTCTAAAATATTTCTCC
CTTCCCTATCATCACAGCTCTCTGCTTGTGGATGCTCTCATTACATTCAC
CTGCATTACCAAGTTATGCCTTCTTATTCCTATGGTGCTTTGACTCTTTC
CACTTACTTATATTGTGTATCACCAACGTTTCTTTATATTTCGTATAAAA
AACAATTGTTCTCAAAGAAGACTCTCCTATGACTACACCACTTCTCACCT
CTTCGTAACTACCTTACTTACG
AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTCTGGCTGGATAACTGCTCCCAGCCC
CTTTTTTGGGGGAGGGGCATATCAAGGGAGTTAATGTTTAATCATTATAC
TAGGAGCATAATGAAGGATAACTGTGGCAGAAGCTAGGGAACTAAGAGTC
AGAAAGGAGGAACTTGTAAACCGACAGTGATGCTTCTGTTTTATGGGTGT
GGAATGGATGGATGGATACGTTTGCCTTTTACATTCCTGCTAAGGGACTT
AGAGTGCCTTTTTTTTCAGAGAGCACTTGTCTGGCGTGTGCAAAGTCCTG
GGTTCAATTCCAGCATCACAAAGACAAACTCATACAAACTAAATGCCATT
ATAGGTATGGTTCTTGTTTCTAGTAGCTACAAGGGGGCTGATTCAGGGGA
AACAGTTTGTCAACGTACTGAAAACGTCTCTGGGTTTGACAGAGTATCAA
ACAGGCTACAATTTGAGGACTTCAGAGCACCCCACACCATTTGCCATTTA
CAGAGATGCCTTATCACAGGGGCAATCTCACTAAAAGTTTCACACTTGGT
GCTTATTAATGCTCATTACAGATTATTTCCCTTAGCTTCATTAAACTTTA
ATCTCAGCTGTTTTCTGGCACACTAACAATATGGCAGACCCATCCTTTCG
TCTCAGCTCCAAACTTTGCCTCTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_h09.g1 MSMg01no492_h09.g1 CHROMAT_FILE:
MSMg01no492_h09.g1 PHD_FILE: MSMg01no492_h09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:42 2005
         (560 letters)



>mm_chr2_59291955_59292914
          Length = 960

 Score =  791 bits (409), Expect = 0.0
 Identities = 446/463 (96%), Gaps = 9/463 (1%)
 Strand = Plus / Minus

                                                                       
Query: 102 gtggcagaagctagggaactaagagtcagaaaggaggaacttgtaaaccgacagtgatgc 161
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 960 gtggcagaagctagggaactaagagtcagaaaggaggaacttgtaaactgtcagtgatgc 901

                                                                       
Query: 162 ttctgttttatgggtgtggaatggatggatggatacgtttgccttttacattcctgctaa 221
           ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 900 ttccgttttatgggtgtggaatggatggatgtatacgtttgccttttacattcctgctaa 841

                                                                       
Query: 222 gggacttagagtgccttttttt----tcagagagcacttgtctggcgtgtgcaaagtcct 277
           |||||||||||||||      |    ||||||||||||||||||||||||||||||||||
Sbjct: 840 gggacttagagtgcc-----gtccagtcagagagcacttgtctggcgtgtgcaaagtcct 786

                                                                       
Query: 278 gggttcaattccagcatcacaaagacaaactcatacaaactaaatgccattataggtatg 337
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 gggttcaattccagcatcacaaagacaaactcatacaaactaaatgccattataggtatg 726

                                                                       
Query: 338 gttcttgtttctagtagctacaagggggctgattcaggggaaacagtttgtcaacgtact 397
           |||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||
Sbjct: 725 gttcttgtttctagtagctacaggggggctgattcaggggaaacagtttgttaatgtact 666

                                                                       
Query: 398 gaaaacgtctctgggtttgacagagtatcaaacaggctacaatttgaggacttcagagca 457
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gaaaacgtctctgggtttgacagagtatcaaacaggctacaatttgaggacttcagagca 606

                                                                       
Query: 458 ccccacaccatttgccatttacagagatgccttatcacaggggcaatctcactaaaagtt 517
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ccccacaccatttgccatttacagagatgccttatcacaggggcaatctcactaaaagtt 546

                                                      
Query: 518 tcacacttggtgcttattaatgctcattacagattatttccct 560
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tcacacttggtgcttattaatgctcattacagattatttccct 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)