BAC Information

Click to search

BAC

Clone NameMSMg01-493L10
Chromosome2 (Build37)
Map Location 168,672,440 - 168,672,942
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043728, Ptpn1, 2310033K02Rik, Pard6b, Adnp, Dpm1, Mocs3, LOC100043908, Kcng1, LOC668952, Nfatc2, Atp9a, Sall4
Downstream geneZfp64, LOC100043909, EG668954, Tshz2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493L10.T7 (MSMg01no493_l10.b1)MSMg01-493L10.TJ (MSMg01no493_l10.g1)
ACCAG571166AG571167
length744741
length of high quality
(start - end)		497 (41 - 537)559 (75 - 633)
definitionCHROMAT_FILE: MSMg01no493_l10.b1 PHD_FILE: MSMg01no493_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:21 2005CHROMAT_FILE: MSMg01no493_l10.g1 PHD_FILE: MSMg01no493_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAGGATCCGCGGA
ATTCCTTAGCTTGCCAAGGCTCAGCTTCTGTGTTTGTAAAGGGGCCCTGG
GAAGAGGCCTACTTTGTAGTGTGATGGTCCATTGCAACCTAGCTTGGAAT
CCGTGTGTGTGTGTGTGTGTGTGTACGCGCACACATGTGTGTATTTGAAT
ATGTGTGTGTGCACGACTGTATGTGACACGTGTGTGTATGTGTATATGTA
TTTGGATGTGTGTATGTGTACGTGTGTGCAAGCACTTGTGTATTTGATAC
ATGTGTGTGTGCTCACACATATGTGTATTTGAATATGTGTGTGTGCATGA
GCTAGCTCACCAGTTCACCAGCATGCGCAGTATGGAGGCCAGAGCCTGCG
GGTTGGTGTCCCCCCTTAAACATCTTCCACTTATGCTTTTGGCGACAGGG
CCTCTCACTTAGCCTGGAGTTCTTTTTGACTGAATTGCCTGGCCAGAGAG
TCCCTGGCATCCATCTGTCTCCAAGCCTCCAGCAGCAGGGGGAGGACACA
CTGTCACACTTAGCTTCTCCTCATGTGGGTACTGGCCCTTCAAACTCAAG
TCCTTGTGCTTGACAGAAAGTCCTCTGTCCACAGAGGCATCTCTCAGCCC
ACTGCTTTTTGAGGAGTGTCTCTATACAGCTGATACTGGTCTTGAACTCC
TGATCCTCCTGCTTGCACCCCTCGAGTACTGGGGTGACAGGGGT

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTCATTCATTCAATCATTCATTCAT
TCATTCAGGTTTTTGAAACAAGGCCTATGTAGCCCTGGCTGTCCTAGAAC
TCACTCTGTAGACCAGGCTGGCTTCAAACTCATAGAGATCCACCTGTCTC
TGTCTCCTAAATGCTGTGATTAAAAGTGTGTGCTACCACCGCCTGGCTTT
GAGATTTTTTTTTTCTTAATTAAGTCATTTGAAATGGGAAGACTCACTTC
TAATCTGGGCCTTCTGAGGTGGGAAGATCCTCCTTTAATCTAGGCCACAC
CTTCTGCTGGCAGCCAATAGAAAGGACATGGAAGAAATAAGCTTGCTCTC
TCTGCCTGCTTGCCTTTGCTCTGGATAGCAAAGTTCATTCCTTCCTGCGT
TAGAGCCTACAACTTCAGGATTCCAGTATCTACTGAAGACCAGCTGAGAT
CCACAGCCTTGTGGACGGAACAATCACTGCGTTCCTGGACCTTCGGCGGG
TAGACAGCCAGTTGGACTAAATGGTCAGCAGGGAGCCTGCAAGCCATTCT
AATTAATCCCCCTCATATATAAATGTCTCCAGTTCGGCTCCTGGAGAACC
CTGACTCTTATGTACAGCCTGAAGGAAGCACACTGGTGACCGGATCCGAC
AGGAGCCCCGTGGCTGCGCTACAGTCTCATCTGATGTCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_l10.b1 MSMg01no493_l10.b1 CHROMAT_FILE:
MSMg01no493_l10.b1 PHD_FILE: MSMg01no493_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:21 2005
         (497 letters)



>mm_chr2_168672160_168673058
          Length = 899

 Score =  833 bits (431), Expect = 0.0
 Identities = 480/503 (95%), Gaps = 13/503 (2%)
 Strand = Plus / Minus

                                                                       
Query: 8   ggaattccttagcttgc-caaggctcagcttctgtgtttgtaaaggggccctgggaagag 66
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 ggaattccttagcctgcacaaggctcagcttctgtgtttgtaaaggggccctgggaagag 724

                                                                       
Query: 67  gcctactttgtagtgtgatggtccattgcaacctagcttggaatccgtgtgtgtgtgtgt 126
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 723 gcctactttgtagtgtgatggtccattgcaacctagtttggaatccgtgtgtgtgtgtgt 664

                                                                       
Query: 127 g----------tgtgtgtacgcgcacacatgtgtgtatttgaatatgtgtgtgtgcacga 176
           |          |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gtatgtgtgtatgtgtgtacgcgcacacatgtgtgtatttgaatatgtgtgtgtgcacga 604

                                                                       
Query: 177 ctgtatgtgacacgtgtgtgtatgtgtatatgtatttggatgtgtgtatgtgtacgtgtg 236
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ctgtatgtgttacgtgtgtgtatgtgtatatgtatttggatgtgtgtatgtgtacgtgtg 544

                                                                       
Query: 237 tgcaagcacttgtgtatttgataca--tgtgtgtgtgctcacacatatgtgtatttgaat 294
           |||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||
Sbjct: 543 tgcaagcacttgtgtatttgatacatgtgtgtgtgtgctcacacgtatgtgtatttgaat 484

                                                                       
Query: 295 atgtgtgtgtgcatgagctagctcaccagttcaccagcatgcgcagtatggaggccagag 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 atgtgtgtgtgcatgagctagctcaccagttcaccagcatgcgcagtatggaggccagag 424

                                                                       
Query: 355 cctgcgggttggtgtccccccttaaacatcttccacttatgcttttggcgacagggcctc 414
           ||||| ||||||||||   | |||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cctgccggttggtgtctttctttaaacatcttccacttatgcttttggcgacagggcctc 364

                                                                       
Query: 415 tcacttagcctggagttctttttgactgaattgcctggccagagagtccctggcatccat 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tcacttagcctggagttctttttgactgaattgcctggccagagagtccctggcatccat 304

                                  
Query: 475 ctgtctccaagcctccagcagca 497
           |||||||||||||||||||||||
Sbjct: 303 ctgtctccaagcctccagcagca 281


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 899
Length adjustment: 10
Effective length of query: 487
Effective length of database: 889
Effective search space:   432943
Effective search space used:   432943
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |