Query= MSMg01no495_b08.b1 MSMg01no495_b08.b1 CHROMAT_FILE:
MSMg01no495_b08.b1 PHD_FILE: MSMg01no495_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:05 2005
(580 letters)
>mm_chr18_4200481_4201460
Length = 980
Score = 636 bits (329), Expect = 0.0
Identities = 344/349 (98%)
Strand = Plus / Minus
Query: 1 gattttgtagacagatgcagtggcatagtatttgacttgattactaattacaccatatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gattttgtagacagatgcagtggcatagtatttgacttgattactaattacaccatatac 444
Query: 61 atggacaccatataatgacatgtaaaaaatgagaaaagaggtggggaaagtgggaaggta 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atggacactatataatgacatgtaaaaaatgagaaaagaggtggggaaagtgggaaggta 384
Query: 121 cagaaccagggtcacacttgctcagtgcatgctcctttacctcggggagccctgggacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cagaaccagggtcacacttgctcagtgcatgctcctttacctcggggagccctgggacac 324
Query: 181 aggggaggcaagggaaaagacactggctggaaaggccaggcagtccacaacagctgcttg 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 323 aggggaggcaagggaaaagacactggctgggaaggccaggcagtccacaacagctgcttg 264
Query: 241 ctgttttacttctagtgtaagattgtgagtgtgaattgtgcctaagctttatactaacac 300
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 263 ctgtttcacttctagtgtaagattgtgagtgtgcattgtgcctaagctttatactaacac 204
Query: 301 aacagaaaaaagaaaaggaaagaaaggaaaagaagaggagaggagagga 349
||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 203 aacagaaaaaagaaaaggaaagaaaagaaaagaagaggagaggagagga 155
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no495_b08.g1 MSMg01no495_b08.g1 CHROMAT_FILE:
MSMg01no495_b08.g1 PHD_FILE: MSMg01no495_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:05 2005
(669 letters)
>mm_chr2_176682066_176683136
Length = 1071
Score = 1017 bits (526), Expect = 0.0
Identities = 636/674 (94%), Gaps = 6/674 (0%)
Strand = Plus / Plus
Query: 1 cagtaatgtgcttgatctataattgtgcacaaaactgtttaaacttaagactgctatatc 60
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 cagtcatgtgcttgatctgtaattgtgcacaaaactgtttaaacttaagactgctatatc 258
Query: 61 caggaccattgtctgttttgataattttgggctgtcccatgacagaaaaggcatacaatg 120
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cagggccgttgtctgttttgataattttgggctgtcccatgacagaaaaggcatacaatg 318
Query: 121 aatgatttata--acatctttggtagcttctccagtgtgggcggaggcacacaaaaaccc 178
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 319 aatgatttatataacatctttggtagcttctccagtgtgggcggaagcacacaaaaaccc 378
Query: 179 actgaaggtatcgatggacacatgtacaaatttaagcttcccaaaagatgggatgtgagt 238
|||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 379 actgaaggtatcaacggacacatgtacaaacataagcttcccaaaagatgggatgtgagt 438
Query: 239 tacatccatttgccagagttctccggggacaatgccccatggattaactcctaaatgtgg 298
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 439 tacatccatttgccagagttctccggggacaaggccccatgggttaactcctaaatgtgg 498
Query: 299 ttctggcaacagggtaagacaatttttacactgtttaacaatctgtctggcttgttccct 358
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 499 ttctggcaacagggtaagacaatttttacactgtttaacgatttgtctggcttgttccct 558
Query: 359 ggttatgttgaaccgtagtctgagtgtctgtgcattgagatgatgtaaagtatgggctgt 418
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 559 ggttatgttgaatcgtagtctgagtgtctgtgcattgagatgatgtaaagtatgggttct 618
Query: 419 ctgagcctgtgacaatgggtcaagctcgatagtaaggcatgtaagctgagtggcctgatc 478
||||| |||||||| ||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 619 ctgagtctgtgacagtgggtcaggctcgatagtaaggcatgtaagccaagtggcctgatc 678
Query: 479 agcaagatcatttctccaggacatgggtccaggaagtcccgtgtgggcttgaatatgccc 538
|||||||||||||| || ||||| ||||| |||||||||||||||||| ||||||||||
Sbjct: 679 agcaagatcatttcaccgggacaggggtctgggaagtcccgtgtgggctcgaatatgccc 738
Query: 539 cataaaaaacgggtaggctcgacttcttatgagcatttgtattttaaga--catctgaaa 596
|| |||||| |||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 739 cacaaaaaatgggtaggctctacttcttatgagcatttgtattttaagaaacatctgaaa 798
Query: 597 agtggcagtggtgggttgaatactagggaccacttctaaagc-cttcaaagcccttacca 655
||||||||||||||||||||||||||||||||| |||||||| || |||||| |||||||
Sbjct: 799 agtggcagtggtgggttgaatactagggaccacctctaaagctct-caaagctcttacca 857
Query: 656 cataatggctatct 669
||||||||||||||
Sbjct: 858 cataatggctatct 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1071
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1061
Effective search space: 699199
Effective search space used: 699199
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
