BAC Information

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BAC

Clone NameMSMg01-496E05
Chromosome2 (Build37)
Map Location 87,648,614 - 87,649,195
singlet/doubletsinglet
Overlap geneGA_x5J8B7W3Y5M-1094074-1093275
Upstream geneOlfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143
Downstream geneOlfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496E05.T7 (MSMg01no496_e05.b1)MSMg01-496E05.TJ (MSMg01no496_e05.g1)
ACCAG573110AG573111
length737778
length of high quality
(start - end)		588 (55 - 642)63 (75 - 137)
definitionCHROMAT_FILE: MSMg01no496_e05.b1 PHD_FILE: MSMg01no496_e05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:32 2005CHROMAT_FILE: MSMg01no496_e05.g1 PHD_FILE: MSMg01no496_e05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:32 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TTTAGAGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTTGGGTACGTAACTGATATATAACAGATTTCCAGAG
AGAAAAAAATTTGTCAGGAAAAAAATACATGGGTTTCTACAATGCATGGT
CAAGCCTAGTTATTAATATGATGAGGCAATTGCCGATGAGGATAATCCTG
TAAATGATGGAGAACAGTGCAGACAGAATCCCTTGAAGGTTAGGAAGTGT
GTTAAGTGTGATAAGTAATTGTCTTGTCCAGAGAATTGTAAATACAATAA
CAACACAATAAATATAATATCGTTCTTTTTTTAATCACTGATATGAAATT
CTCTTTCTGCAGGAGATAATGGAAATAGTATAACTTTATTTAGATCCTCA
CTCAAAGCCACTTAAACATTCACAGACACAAATTTCAAAATTTTTACCAG
GTGAGGTTCTGGAGCTAATAATCACCCGCTGTTTCCCCTTGGGATTAGCC
TGAATCGGGTTAGGCTCATTCATAATTTTTTAAGAATACATTAAGTCACC
TTTGTCAAATAATAGGATTTGCATCACAAATTGATGCAAAAATACCTTTT
AGAACTTTCACAATATAGATTTGGATATAAGACAATGAAAATATATACAA
CCCAAGCACAATGTCTATAGGCAATACCATATCACAGAGTGGAAAACACT
GAATGTAGTGAATTGCTTGAGAAGGATTTCTGAAGAG

NNCCGATGATANNGNTANGCCGGGCGGCCGCCCTTTCAAACACATTTANG
TGACCTATANAATGCCACAAGGAATTCTCTGTTTACCTCANTTCCACATT
TTGCATAGCGTTACTTGGTTCTCTGGAGTCTAACTTCTCGGNNCATTTGT
ATACATTGGACATTAACCATATATCAAATGAAAGATTGGTAAAGATCTTT
TCCCCCCCATCTGTGGTTTNCCATTTTTTGCCCTATTGACAGTGCCATTT
GCTTTATAAAANGNTTNGCAATTTTATGAAGCCCTGCTTTTTTATTTCTT
GACCTAATGCATAANCCATTTTTTTTTTGTTCTNGAAAAGTCCCCTAATG
GTTTGAAGGTTTTTCCCCCTTTTCTTCCCAAAAAATTCCCCGGATTCGGG
TTTTATGGGAGGTTTTTACCCCCCTTTGAACTTAACTTTTTAAANGGAAA
AAAAAATTAAAAATTTGCTTTCTTCCCCTGGTAAACCCCTTTAAAACCCC
CCCTTTTTTAAAAACCCCCCCGGGGCCCCCCCATTTTTTTCCTCTTTTAA
AAAAAAAAAACCCCCAAAAANGGGGGNNNNNNNNNNNCAAAAAAAANNAC
TAAAAAAACACCCCCCCCCTCTTCCCACAAACCCTCCCTTTTTTTTTTTT
TTTTTAAAGGGGAANCCCNCCCCCAAAAATAAACCCCCCCACCCNCTTTT
TTTAAAAAAAAAAAACCCCCCCCTTTTTTTTTTCTCCCCCCATAATAAAT
ATTCTTTCCTTCGGCGGGGGGGGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_e05.b1 MSMg01no496_e05.b1 CHROMAT_FILE:
MSMg01no496_e05.b1 PHD_FILE: MSMg01no496_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:32 2005
         (588 letters)



>mm_chr2_87648410_87649396
          Length = 987

 Score =  984 bits (509), Expect = 0.0
 Identities = 565/591 (95%), Gaps = 16/591 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgggtac-gtaactgatatataacagatttccagagagaaaaaaatttgtcag 63
           ||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 205 gaattcttggg-acagtaactgatatataacagatttccagagagaaaaaa-tttgtcag 262

                                                                       
Query: 64  gaaaaaaatacatgggtttctacaatgcatggtcaagcctagttattaatatgatgaggc 123
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 263 gaaaaaaatacatgggtttctacaatgcatgatcaagcctagttattaatatgatgaggc 322

                                                                       
Query: 124 aattgccgatgaggataatcctgtaaatgatggagaacagtgcagacagaatcccttgaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aattgccgatgaggataatcctgtaaatgatggagaacagtgcagacagaatcccttgaa 382

                                                                       
Query: 184 ggttaggaagtgtgttaagtgtgataagtaattgtcttgtccagagaattgtaaatacaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 383 ggttaggaagtgtgttaagtgtgataagtaattgtcttgtccagagaattgtaaatataa 442

                                                                       
Query: 244 taacaacacaataaatataatatcgttcttttttta------atcactgatatgaaattc 297
           ||||||||||||||||||||||| ||||       |      ||||||||||||||||||
Sbjct: 443 taacaacacaataaatataatattgttc-------acaccaaatcactgatatgaaattc 495

                                                                       
Query: 298 tctttctgcaggagataatggaaatagtataactttatttagatcctcactcaaagccac 357
           |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 496 tctttctgcacgagataatggaaatagtataattttatttagatcctcactcaaagccac 555

                                                                       
Query: 358 ttaaacattcacagacacaaatttcaaaatttttaccaggtgaggttctggagctaataa 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ttaaacattcacagacacaaatttcaaaatttttaccaggtgaggttctggagctaataa 615

                                                                       
Query: 418 tcacccgctgtttccccttgggattagcctgaatcgggttaggctcattcataatttttt 477
           ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 616 tcacctgctgtttccccttgggattagcctgaatcgggttaggcttattcataatttttt 675

                                                                       
Query: 478 aagaatacattaagtcacctttgtcaaataataggatttgcatcacaaattgatgcaaaa 537
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 676 aagaatacattaagtcacctttgtcaaataataggatttgcatcacaaatcgatgcaaaa 735

                                                              
Query: 538 ataccttttagaactttcacaatatagatttggatataagacaatgaaaat 588
           ||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 736 ataccttttagaactttcacaatatggatttggatataagaaaatgaaaat 786


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 987
Length adjustment: 10
Effective length of query: 578
Effective length of database: 977
Effective search space:   564706
Effective search space used:   564706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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