BAC Information

Click to search

BAC

Clone NameMSMg01-496M10
Chromosome2 (Build37)
Map Location 112,720,320 - 112,720,973
singlet/doubletsinglet
Overlap geneRyr3
Upstream geneOlfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven
Downstream gene4930563P21Rik, Fmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496M10.T7 (MSMg01no496_m10.b1)MSMg01-496M10.TJ (MSMg01no496_m10.g1)
ACCAG573502AG573503
length765781
length of high quality
(start - end)		658 (51 - 708)241 (80 - 320)
definitionCHROMAT_FILE: MSMg01no496_m10.b1 PHD_FILE: MSMg01no496_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:13 2005CHROMAT_FILE: MSMg01no496_m10.g1 PHD_FILE: MSMg01no496_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATGAATTGTATTCATTAGAATGAGTTATTCTTTATTCACA
GACTTCCCCTATACTAACCAAATTTTAAAAACAATTTTATGGGAATTTAA
ACTGTTTTTATATCCCATGTCACTCCAGTGAGAATGGGTAATAAAAAATA
AAAATAACAAGGATTTCGGGTAAGGACTTGGAGAAAGATAAACCCTTCTT
CTCTGCTGGTGGGAACATAAACTTGTGTAGTCAAAATAGTATGAGTCCGA
AGGCTTCTCAAAACACTCAAAATATGGCCCATATGACCCAGATATTCCAC
TCTTGGGTACATATAGAAGGGCCTGGAAGTCAACTTGCCACAGAAATACT
TGAACTTTTGCATTTATTGCTATACTATTAGAAAAGCAGCCAAGAAAACT
TATGGTTGCAGAAAATGTGCTATACATATACACAGTGGGATTTTGTGCAT
CTATAAAGAAAACAATGAAATCATGACTTTCTAAGAAAATAGATACATCT
AAAAATTGTTATGGTAAGTGAAATAAACCAGACCAAGAAGGAAAAATATT
GAATGCTTTCTCTTACACATAGATCCTAGATTTAAAATTGTGTGCATATA
TATTATATAATATACATTGGATTGGCTAATGAAATTGGATATATATATTA
TACATACATACATACATACATACATACATACATACATACATACATACATA
CAACTACTAAAGCAA

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAACAACTAGGCTTTTACA
TTTGCTGTCTAGGCAGACCTTCTGGAGAAAGAACTTAAGTAGAACAGTAG
TCCTTATATTAGCCAAAAAGTTCAGAATACTCATGATACAACTCATAGAC
CAAATGAACTTAATAAGAAGGAAGACCCAGGTGATGGATACTTCAAACCC
ACTTAGAAGGAGGAACAAAATAATCATGGGAGGCAGAGGGAGGGAGGGAT
CTGAGTGGGGAAGGAGAGGGGGTGTTTTTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTTTTTTTCCCCCTNTTTTTTNTTTTTTTTTTTCTTTTTTTT
TTTTTTTTTTTTTTTCCCCCCCCTTTTTTTTTTTTTTTTTTTTCCCCCCT
CCTCTCTTTTTTTCCTTTTCCCTTTTCCCTCCTCTTTTCTCTCTCTTTTT
TCTCCTTTCTCTTTTTCTTTCCTTCCCTCCTCCTCCTCTCCTTTCCCTCC
CTCTTTTCCTTCTTTTTCTTTCCTTCTTCTTTTTTTTCTTCTTCTTCCCC
CCCCTTTTTTTCTTTTCTCCCTCTTCTTCTTTTCCCCTCTCCCTCTCCTT
TTTCCCCTTCTCCTCCTTTTTTTTTTTTTTTTTTNNTCCCCCCCTTTCTC
TCCTTTTCTTTTTTCTCTCCTTTTCCTTCCTTTTCTTTCTTTCTCTCTCC
TCTCCNCTCTCTTTCTCCCCTCTTCCCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_m10.b1 MSMg01no496_m10.b1 CHROMAT_FILE:
MSMg01no496_m10.b1 PHD_FILE: MSMg01no496_m10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:13 2005
         (658 letters)



>mm_chr2_112720116_112721173
          Length = 1058

 Score = 1195 bits (618), Expect = 0.0
 Identities = 645/654 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgaattgtattcattagaatgagttattctttattcacagacttcccctatac 64
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgaaccgtattcattagaatgagttattctttattcacagacttcccctatac 264

                                                                       
Query: 65  taaccaaattttaaaaacaattttatgggaatttaaactgtttttatatcccatgtcact 124
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaccaatttttaaaaacaattttatgggaatttaaactgtttttatatcccatgtcact 324

                                                                       
Query: 125 ccagtgagaatgggtaataaaaaataaaaataacaaggatttcgggtaaggacttggaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccagtgagaatgggtaataaaaaataaaaataacaaggatttcgggtaaggacttggaga 384

                                                                       
Query: 185 aagataaacccttcttctctgctggtgggaacataaacttgtgtagtcaaaatagtatga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 385 aagataaacccttcttctctgctggtgggaacataaacttgtgtagtcaaaatggtatga 444

                                                                       
Query: 245 gtccgaaggcttctcaaaacactcaaaatatggcccatatgacccagatattccactctt 304
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 gtccgaaggcttctcaaaacactcaaaatatgacccatatgacccagatattccactctt 504

                                                                       
Query: 305 gggtacatatagaagggcctggaagtcaacttgccacagaaatacttgaacttttgcatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 505 gggtacatatagaagggcctggaagtcaacttgccacagaaatacttgaacttctgcatt 564

                                                                       
Query: 365 tattgctatactattagaaaagcagccaagaaaacttatggttgcagaaaatgtgctata 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 565 tattgctatactattagaaaagcagccaagaaaacttatggttgcagaaaacgtactata 624

                                                                       
Query: 425 catatacacagtgggattttgtgcatctataaagaaaacaatgaaatcatgactttctaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 catatacacagtgggattttgtgcatctataaagaaaacaatgaaatcatgactttctaa 684

                                                                       
Query: 485 gaaaatagatacatctaaaaattgttatggtaagtgaaataaaccagaccaagaaggaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaaaatagatacatctaaaaattgttatggtaagtgaaataaaccagaccaagaaggaaa 744

                                                                       
Query: 545 aatattgaatgctttctcttacacatagatcctagatttaaaattgtgtgcatatatatt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aatattgaatgctttctcttacacatagatcctagatttaaaattgtgtgcatatatatt 804

                                                                 
Query: 605 atataatatacattggattggctaatgaaattggatatatatattatacataca 658
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 atataatatatattggattggctaatgaaattggatatatatattatacataca 858


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |