Query= MSMg01no497_a11.b1 MSMg01no497_a11.b1 CHROMAT_FILE:
MSMg01no497_a11.b1 PHD_FILE: MSMg01no497_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:34 2005
(664 letters)
>mm_chr2_87651018_87652083
Length = 1066
Score = 1191 bits (616), Expect = 0.0
Identities = 653/666 (98%), Gaps = 2/666 (0%)
Strand = Plus / Plus
Query: 1 taataaattaaagttaaaatataattgtttccccaaatactcatacccatattttctgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taataaattaaagttaaaatataattgtttccccaaatactcatacccatattttctgac 260
Query: 61 agtcttctatgattctgaagtatataaggcagtaactaccaatagaaatagaaaaattca 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtcttctattattctgaagtatataaggcagtaactaccaatagaaatagaaaaattca 320
Query: 121 tactcattggataagtccaaaagtgaatttgagtctctccaaactctactaaaaattctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactcattggataagtccaaaagtgaatttgagtctctccaaactctactaaaaattctg 380
Query: 181 --aaaaaaaataaattggatgaattcagttccattttgagtttattcacttaaatgactc 238
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 381 aaaaaaaaaataaattggatgaattcggttccattttgagtttattcacttaaataactc 440
Query: 239 tgctcccctgtagtatctatcctttctaaataatactaaagggaacgttgagacctactt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctcccctgtagtatctatcctttctaaataatactaaagggaacgttgagacctactt 500
Query: 299 cctctttgctagtcagaatggaatgaatttatggtatcacacagaactgcaaacatgctc 358
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 cctctttgctagtcagaatggaatgaatttatggtatcacacagcactgcaaacatgctc 560
Query: 359 agtatttttgcacatattttctcctttgttattataaccctagattaccttactatgaga 418
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 561 agtatttttgcacatattttctcctttgttattataatcctagattactttactatgaga 620
Query: 419 ttctgttgttgttcctttttaaaactacaattcaaatgtctatttctctgcctcttaata 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctgttgttgttcctttttaaaactacaattcaaatgtctatttctctgcctcttaata 680
Query: 479 tatgcaaaatgatttctataaatttaaatgtgaaagatgtatgagtaatttcaaaatttt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatgcaaaatgatttctataaatttaaatgtgaaagatgtatgagtaatttcaaaatttt 740
Query: 539 ctgaagtacaaacagttatgttgtatctgaacatatgtgctatcatgcgtttaaccctga 598
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 741 ctgaagtacaaacagttatgttgtatctgaacatatgtgctatcatgtgtttaaccctga 800
Query: 599 gtaggggtattaaaattattcagccttaaatggatgaacctggagggcatcatcctgagt 658
||||||||||||| ||||||||| |||||||||||| ||| |||||||||||||||||||
Sbjct: 801 gtaggggtattaacattattcagtcttaaatggatggacccggagggcatcatcctgagt 860
Query: 659 gagata 664
||||||
Sbjct: 861 gagata 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1066
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1056
Effective search space: 690624
Effective search space used: 690624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no497_a11.g1 MSMg01no497_a11.g1 CHROMAT_FILE:
MSMg01no497_a11.g1 PHD_FILE: MSMg01no497_a11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:34 2005
(625 letters)
>mm_chr2_87827803_87828828
Length = 1026
Score = 1118 bits (578), Expect = 0.0
Identities = 614/626 (98%), Gaps = 1/626 (0%)
Strand = Plus / Minus
Query: 1 attaagcaaaatatggaatgatgcaacaaatgtttgtcttggaaatgcctcaaagataat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 attaagcaaaatatggaatgatgcaacaaatgtttgtcttggaaatgcctcaaagataat 767
Query: 61 cactttgactttccaaatattagactatataaaacataataatatttattaaccccctga 120
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 766 cactttgactttccaaatattagactatataaaacataataacgtttattaaccccctga 707
Query: 121 tttaaataaccagaatagtttttcagatggcactgagaatattatgtgcaaaaagagtag 180
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 706 tttaaataaacagaatagtttttcagatggcactgagaatattatgtccaaaaagagtag 647
Query: 181 tagaatgaactgaaatagcatatttattgatataaaaatatatcaatataccaataaata 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 646 tagaatgaactgaaatagcatatttattgatataaaaatatatcaatatatcaataaata 587
Query: 241 taattgcaataaataaaatgagtatatttccattctttatgattagacttttaaaataaa 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 586 taattgcaataaataaaatgagtatatttccattctttataattagacttttaaaataaa 527
Query: 301 actgtggaaagagaacaaactatgaatgaaatatatttattatatctacactga-ctgaa 359
|||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 526 actgtggaaagaaaacaaactatgaataaaatatatttattatatctacactgaactgaa 467
Query: 360 attctaactacttaaggcaacacaattttctaaagtcttcattcataaacacccatactt 419
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 attctaactacttaaagcaacacaattttctaaagtcttcattcataaacacccatactt 407
Query: 420 tggaatattttgtttcagttccaaaattttgattttatttggaaagtaggaaatgcatca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tggaatattttgtttcagttccaaaattttgattttatttggaaagtaggaaatgcatca 347
Query: 480 agcatggaacagcgacagatagaggtacgttagtttaccaatttgtctttctaattacct 539
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 346 agcatggaacagcgacagatagaggtactttagtttaccaatttgtctttctaattacct 287
Query: 540 acattaaatgtgaactaaaaggaatgaatattttacaaaagtaatatagataatcaagtt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 acattaaatgtgaactaaaaggaatgaatattttacaaaagtaatatagataatcaagtt 227
Query: 600 cacctctatgtatcaaaaaaatgaat 625
||||||||||| ||||||||||||||
Sbjct: 226 cacctctatgtgtcaaaaaaatgaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1026
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1016
Effective search space: 624840
Effective search space used: 624840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
