BAC Information

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BAC

Clone NameMSMg01-497B13
Chromosome2 (Build37)
Map Location 44,719,026 - 44,719,632
singlet/doubletsinglet
Overlap genenone
Upstream geneArhgap15, Gtdc1
Downstream geneZeb2, LOC100042661, LOC100041337, LOC666604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497B13.T7 (MSMg01no497_b13.b1)MSMg01-497B13.TJ (MSMg01no497_b13.g1)
ACCAG573746AG573747
length1,384777
length of high quality
(start - end)
---607 (79 - 685)
definitionCHROMAT_FILE: MSMg01no497_b13.b1 PHD_FILE: MSMg01no497_b13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:39 2005CHROMAT_FILE: MSMg01no497_b13.g1 PHD_FILE: MSMg01no497_b13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGAGATGAAAAGGAGACAGTGGGGCGTGNCTATGCGAGAGAGACGTATA
TATTACCATCAAAGAGAACGAAGAGAAAGAGGTGGTGTGGCGCATCTCTC
TATACGATGACCACACAACGAGCAAACGCTAGATGTCCAGAGATACAACA
CACATAGACAACAACGTCCAGAGCATACCTAGCGCTTGATACCTGCTCGC
ATCTATATGCTCACGAGCCACAACACCATCTGCGTTGTATATCGCAACTC
AGCTCGCAGAGCTNTCATATTAGTCACAGCTCTGCTATTATCTAACGTTC
GCGTCTCATCGTATGGCGTAGACAGTAGCTCCACAATCAGCATCGTTATG
ACCATCTTCTGCCCTGATTAGAGAGAGATGAGAACAACCACTGACACATC
CCCAAGTTCGAGCGGACAAGTGCAGTACCACGCACGAAGGAGTGCTGCGC
CTAGGTATCGCGCTGTATGAACACTAGCGCGTATATGCCGAATCATAGCA
TGTTATATAATAGCTAATGACATTTCAGTAGGNGCGAGGCGGCTACAATA
GTCTCGCGTTCCTCTCCTGCGCGTATNTCCATNTCCNCCATCTGCCTCTC
AAGCAGTGCGCTATGCCGCAGCGATACGGGCAGCGNTCGNCGTGTGTGCC
AGATGTCCCTAGAGACCGGTGTCACGTGGATATACCACTTCTGACCTNAC
AATCACACGCCGCTNTGTATAGTAGTTCCTCTAGCGCGCATTCGTATATT
CGCCTCTGCACACTGGCCTTTTTATACGCTCAAGAACACAAAAGAGAGAG
ACACGTAGAGTCATAGCTAGGATGAACATACGCACACTCGCACTCTCGCG
CAGCGAGCCATAGTGGCATACATCACACACGCTCATGCTACTGATAACGA
ACACCACACCAAGTGAGACACCCCCGCGCAAGATATAATANTTAGGTGAA
TAGACACGNCACAGAGCCGCTACACGCCGTCAGTCGTGGATATGAAGTAT
ATGTTGATGTGTACTATCGCGTCTGAGTCCGGCCGCACAAGACATATACG
AAGTATAAAGCTATATAGGACATCTCAGGTCCAGTATCGCCNTCAGATAC
AGAGAACACAAGCGGGCGCGCGCAGACNGAGAATATACGCTACCTCNCAC
ATNAGTAGTCGCTCCATTATGTGCGCGCTAAGATAGACANGGAGCACCGC
CCACAATATGATCGNACATATCTCGACGCAAGAGTCGCTCCCATANACGA
ATACACAAGACACTACACAGAAGGANTAGACGCGCGNACGCGATGGTGCG
CACCGCATACGCACTCAGTACGCTGTAAGTGCAGTTGTGTAGCGNCNAAT
CGCAGCGACGAGCTCGAGCGCACCGCGCACGCGN
NNNCCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATATTATGAAAATATATTGGGA
AATAGGATTTTGGAGTAGTCAGTGGATAAAATTGTAGAATTAAAGTTCTG
AAATCAGGAGCAGATTAGAAGCATAACCTGAATGCTAAAACTCCAGGGGA
ACCCTTAGAGAAGGTGTCCATTGTAATGGGCAGAAAATATCAGCTAGAAG
GGAGCTGTGCAATTGTAGTATTCTGGAATCCAATGGAATGGAGTTTCAGA
GACATGATGAGTAGAAGTAGTCATTGCCTACTAGAGTGAGAAATGAAACT
AGGCAGACTGACTGGCTTTTTGCCAAACTTAATTGTAAATACTTTAGTAA
AGTGATGCCTAAGAACATTAGGTTGTAATAATTTGAACATTGAATATAGG
TTGAAATATATATTTCATATATATTTTTCATGCATATATTTCATATATAT
ATTTAATGAGCATATGTTAATATTTTATGAGCGTTTTTATGGATAAGTTT
GGTAGGTTTGAAAAAAGTGTGCTATTGATGAAGGAAAAGCAAACTGTGGG
TAGATAGTTGAAGATAAAGAAAAGAAACTGATGGAGCAAGTTCTCAGAGA
TGGCATACATGAATAGGATTCTGCATACATATAGAAGAATTAATTGTGGG
AAAAAAGATGTCACTCATGATGTTAAAGTGAAGGTGGTATAAAACAGAGA
CCACTTTTTTCTATGGTTGAGAATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_b13.g1 MSMg01no497_b13.g1 CHROMAT_FILE:
MSMg01no497_b13.g1 PHD_FILE: MSMg01no497_b13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:40 2005
         (607 letters)



>mm_chr2_44718826_44719832
          Length = 1007

 Score = 1158 bits (599), Expect = 0.0
 Identities = 605/607 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atattatgaaaatatattgggaaataggattttggagtagtcagtggataaaattgtaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 atattatgaaaatatattgggaaataggattttggagtagtcagtggataaaattgtaga 748

                                                                       
Query: 61  attaaagttctgaaatcaggagcagattagaagcataacctgaatgctaaaactccaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 attaaagttctgaaatcaggagcagattagaagcataacctgaatgctaaaactccaggg 688

                                                                       
Query: 121 gaacccttagagaaggtgtccattgtaatgggcagaaaatatcagctagaagggagctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gaacccttagagaaggtgtccattgtaatgggcagaaaatatcagctagaagggagctgt 628

                                                                       
Query: 181 gcaattgtagtattctggaatccaatggaatggagtttcagagacatgatgagtagaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gcaattgtagtattctggaatccaatggaatggagtttcagagacatgatgagtagaagt 568

                                                                       
Query: 241 agtcattgcctactagagtgagaaatgaaactaggcagactgactggctttttgccaaac 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 agccattgcctactagagtgagaaatgaaactaggcagactgactggctttttgccaaac 508

                                                                       
Query: 301 ttaattgtaaatactttagtaaagtgatgcctaagaacattaggttgtaataatttgaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ttaattgtaaatactttagtaaagtgatgcctaagaacattaggttgtaataatttgaac 448

                                                                       
Query: 361 attgaatataggttgaaatatatatttcatatatatttttcatgcatatatttcatatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 attgaatataggttgaaatatatatttcatatatatttttcatgcatatatttcatatat 388

                                                                       
Query: 421 atatttaatgagcatatgttaatattttatgagcgtttttatggataagtttggtaggtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atatttaatgagcatatgttaatattttatgagcgtttttatggataagtttggtaggtt 328

                                                                       
Query: 481 tgaaaaaagtgtgctattgatgaaggaaaagcaaactgtgggtagatagttgaagataaa 540
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 327 tgaaaaaagtgtgctattgatgaaggaaaagcaaactgtgggtagaaagttgaagataaa 268

                                                                       
Query: 541 gaaaagaaactgatggagcaagttctcagagatggcatacatgaataggattctgcatac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gaaaagaaactgatggagcaagttctcagagatggcatacatgaataggattctgcatac 208

                  
Query: 601 atataga 607
           |||||||
Sbjct: 207 atataga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)