BAC Information

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BAC

Clone NameMSMg01-497E23
Chromosome2 (Build37)
Map Location 155,611,783 - 155,794,174
singlet/doubletdoublet
Overlap geneMmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250
Upstream geneRaly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr
Downstream geneErgic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497E23.T7 (MSMg01no497_e23.b1)MSMg01-497E23.TJ (MSMg01no497_e23.g1)
ACCAG573909AG573910
length745760
length of high quality
(start - end)		648 (75 - 722)552 (80 - 631)
definitionCHROMAT_FILE: MSMg01no497_e23.b1 PHD_FILE: MSMg01no497_e23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:57 2005CHROMAT_FILE: MSMg01no497_e23.g1 PHD_FILE: MSMg01no497_e23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,793,527 - 155,794,174)(155,611,783 - 155,612,334)
sequence
TTTTTTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTGACTTCCCGGAATTAAAGGGGCAAAAAGAAGTGAGC
TTCCTGGTGGACTCCAGGGTAAGTGAGATTAGGGGTACATGTGTGGACAG
GGGTTCAGGAGCTCCAAAAGTCAGCGACCAAAACATGTGTTGCCATGAAA
GGAGACAGGTAGACAGGCAAGGATCCTGACATCCCGTCTGAAGAGGGAGA
ATCGCTTCTGGAGCATCCCTGACAGGTGTTTAAGTCAGTGAGTACAACCT
CACTCTTCCACAAGACACACACTTCCTGTGACAGCCCCAGTGTCAACCCT
CCTACCCGTCCACAGCTTACAGTCACTGACAAAGCTTCAACTCCTCCCTT
CAACCCCACTCTCAGGGATTGAGGGCAGCCAGCAAAACTTCCTCACAGCC
ATTCTGTTCCCGCTAAGCCCTGCCCCGCTCCTCAGCCATCTCCCATGTGA
CTTGGTTTAAATCTCTCCACAGATCCCTTCCCTGGTACTTTGCTTATTCC
CACCTTTTAGGAGGGTTTCACATAACTCACGCTGGCTTCAAGCACACCAC
AGTAAGTCACCTCTCTCTCTCTGATAAGGACATATGTCATATGCATGTAC
TATCCCCAGGAATACAGACTGTTATTAATCTTTTATTGTGCAGGTAAATG
AATGAGTTAACTAATTTTCAGATTCGGCCAAAGTTTATTTTCAGC

NNNAACGATGATANTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGTCTCCGTGGCTTGCATT
ACTCTTCACTACATTTATTGCTATTGATTCTCCCCCTAGATGACAAGTAG
AAAGTAGCTGGAGTCTTTTGTCCTGTTACAGCTCTACAGAACCCAGTTTT
TAGTACGTTGCTCAATAAATATCAATGGGGCTAAACTGATGGCTCAGCAG
ATCTTGCAGAGGCCCCAGGTTCAGTTTCCAGCATCCACATGGTAGCTCAC
CTGTAACTCCAGTTCAGTGGGGTGCAACACTCCTTCTGATCTCTGTGGGC
TCCTGCATATGTATGGTGCACATTCATACACACTCAGGCACACACAGACA
CACACCTGGAGCAAATATTTAAAATGTTAAAATGTTATAAACAAATACTG
GATGAATGGACAGAAGCAAGTGGATTTGAGCCAGAGAGATGGCTCAGGGG
TTTAGAGCACCAACTGTTCTTCCAGAGGTCCTGAGTTCAATTCCCAACAA
CCACACGGTGGCTCACAACCATCTGTAATGGGATCCAAGGCCGCCTTCTG
GTGTATCTGAGAGAGCGACAGTGTACTCATATACGTNNNNATAAAATAAT
AAAAGAAAGAAAGAAACAGGGTGGATTTGATGTTTGGGAGGCAGTACTAA
TACTTGTTGGTAAATCCCGGTATGAGGAGTAAGGATGAGCAAGGAATCTT
GGGTCATATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_e23.b1 MSMg01no497_e23.b1 CHROMAT_FILE:
MSMg01no497_e23.b1 PHD_FILE: MSMg01no497_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:57 2005
         (648 letters)



>mm_chr2_155793327_155794374
          Length = 1048

 Score = 1253 bits (648), Expect = 0.0
 Identities = 648/648 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattaaaggggcaaaaagaagtgagcttcctggtggactccagggtaagtgagattaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aattaaaggggcaaaaagaagtgagcttcctggtggactccagggtaagtgagattaggg 789

                                                                       
Query: 61  gtacatgtgtggacaggggttcaggagctccaaaagtcagcgaccaaaacatgtgttgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 gtacatgtgtggacaggggttcaggagctccaaaagtcagcgaccaaaacatgtgttgcc 729

                                                                       
Query: 121 atgaaaggagacaggtagacaggcaaggatcctgacatcccgtctgaagagggagaatcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 atgaaaggagacaggtagacaggcaaggatcctgacatcccgtctgaagagggagaatcg 669

                                                                       
Query: 181 cttctggagcatccctgacaggtgtttaagtcagtgagtacaacctcactcttccacaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cttctggagcatccctgacaggtgtttaagtcagtgagtacaacctcactcttccacaag 609

                                                                       
Query: 241 acacacacttcctgtgacagccccagtgtcaaccctcctacccgtccacagcttacagtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 acacacacttcctgtgacagccccagtgtcaaccctcctacccgtccacagcttacagtc 549

                                                                       
Query: 301 actgacaaagcttcaactcctcccttcaaccccactctcagggattgagggcagccagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 actgacaaagcttcaactcctcccttcaaccccactctcagggattgagggcagccagca 489

                                                                       
Query: 361 aaacttcctcacagccattctgttcccgctaagccctgccccgctcctcagccatctccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aaacttcctcacagccattctgttcccgctaagccctgccccgctcctcagccatctccc 429

                                                                       
Query: 421 atgtgacttggtttaaatctctccacagatcccttccctggtactttgcttattcccacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 atgtgacttggtttaaatctctccacagatcccttccctggtactttgcttattcccacc 369

                                                                       
Query: 481 ttttaggagggtttcacataactcacgctggcttcaagcacaccacagtaagtcacctct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttttaggagggtttcacataactcacgctggcttcaagcacaccacagtaagtcacctct 309

                                                                       
Query: 541 ctctctctgataaggacatatgtcatatgcatgtactatccccaggaatacagactgtta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ctctctctgataaggacatatgtcatatgcatgtactatccccaggaatacagactgtta 249

                                                           
Query: 601 ttaatcttttattgtgcaggtaaatgaatgagttaactaattttcaga 648
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ttaatcttttattgtgcaggtaaatgaatgagttaactaattttcaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no497_e23.g1 MSMg01no497_e23.g1 CHROMAT_FILE:
MSMg01no497_e23.g1 PHD_FILE: MSMg01no497_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:57 2005
         (552 letters)



>mm_chr2_155611583_155612534
          Length = 952

 Score = 1067 bits (552), Expect = 0.0
 Identities = 552/552 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccgtctccgtggcttgcattactcttcactacatttattgctattgattctccccctag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccgtctccgtggcttgcattactcttcactacatttattgctattgattctccccctag 260

                                                                       
Query: 61  atgacaagtagaaagtagctggagtcttttgtcctgttacagctctacagaacccagttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgacaagtagaaagtagctggagtcttttgtcctgttacagctctacagaacccagttt 320

                                                                       
Query: 121 ttagtacgttgctcaataaatatcaatggggctaaactgatggctcagcagatcttgcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagtacgttgctcaataaatatcaatggggctaaactgatggctcagcagatcttgcag 380

                                                                       
Query: 181 aggccccaggttcagtttccagcatccacatggtagctcacctgtaactccagttcagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggccccaggttcagtttccagcatccacatggtagctcacctgtaactccagttcagtg 440

                                                                       
Query: 241 gggtgcaacactccttctgatctctgtgggctcctgcatatgtatggtgcacattcatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggtgcaacactccttctgatctctgtgggctcctgcatatgtatggtgcacattcatac 500

                                                                       
Query: 301 acactcaggcacacacagacacacacctggagcaaatatttaaaatgttaaaatgttata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acactcaggcacacacagacacacacctggagcaaatatttaaaatgttaaaatgttata 560

                                                                       
Query: 361 aacaaatactggatgaatggacagaagcaagtggatttgagccagagagatggctcaggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacaaatactggatgaatggacagaagcaagtggatttgagccagagagatggctcaggg 620

                                                                       
Query: 421 gtttagagcaccaactgttcttccagaggtcctgagttcaattcccaacaaccacacggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtttagagcaccaactgttcttccagaggtcctgagttcaattcccaacaaccacacggt 680

                                                                       
Query: 481 ggctcacaaccatctgtaatgggatccaaggccgccttctggtgtatctgagagagcgac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggctcacaaccatctgtaatgggatccaaggccgccttctggtgtatctgagagagcgac 740

                       
Query: 541 agtgtactcata 552
           ||||||||||||
Sbjct: 741 agtgtactcata 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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