BAC Information

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BAC

Clone NameMSMg01-497G01
Chromosome2 (Build37)
Map Location 38,069,253 - 38,224,720
singlet/doubletdoublet
Overlap geneDennd1a, LOC100040947, Lhx2
Upstream geneOlfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491
Downstream geneNek6, Psmb7, LOC674251, Nr5a1, Nr6a1, Olfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497G01.T7 (MSMg01no497_g01.b1)MSMg01-497G01.TJ (MSMg01no497_g01.g1)
ACCAG573961AG573962
length754752
length of high quality
(start - end)
706 (49 - 754)648 (77 - 724)
definitionCHROMAT_FILE: MSMg01no497_g01.b1 PHD_FILE: MSMg01no497_g01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:02 2005CHROMAT_FILE: MSMg01no497_g01.g1 PHD_FILE: MSMg01no497_g01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,224,019 - 38,224,720)(38,069,253 - 38,069,900)
sequence
NNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCC
GCGGAATTCAACTAATTATCATTTCTTTTTTAAAGAAATCGTGGGGGCTC
GGGGAGAAGGGGGTGGCGAGTCATTAGAAAAGGTTGGTAAGAGTCGTTTG
TGAAGGGCTGTGGGGCTCGTGGCCCTCCAGGTTGCCAGGCACAGAAGTTA
AGACTGACGTCACAGTCGGCAGGGTGGGGCTAGTCAAGTCTGTGAGGGTT
GTAGGCGTGCTGGAGGGGCTGAGCGAGGCGTTGGACAGCTCCGAGGCGGG
CCCTGAAGGCGTCCCTGTCTGCAGCGTGGCATCTGACGTCTTGTCCACGC
CCGTGTTTTCCTGCCGTAAAAGGTTGCGCCTGAACTTGGCCCGGGCATTC
TGAAACCAGACCTGTGTGGAACGACAGGGGAGGACTGGTTATGGGAAGGC
GGAGACCGACAAGGGAAAGACCGACAAAGGGAAAGCTGCAGCTCATTGAT
GCTCAACTCAGTTCAACCTGGCCTTAGCAGGAGGTCTAGAGAGCCCATGC
CACATTCTCTTCACAAAAGTAAAATAAAGTTTTAGTTTCTCTGGTGGCTA
TGACCGGGTTACCTTCCTACCAGGTCACTTGCCGTGGTGCTGAGACTGAG
GCCTTGAAAATGACACTACATTGAGGCCAATGTAGAAAGGACAGCAGAGA
CTTGAAGATTTTGCAAGAAAGAAAGAAAGATTGAGATCATAGTGAGAAAA
ACAT
CCGCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTAAAATAGAAGTATCTTTAAAT
GTCTCTTTTTAAATTAGATTATTAACTCAGGATGGGAGACATACTACGGC
ATGGGTGTAGAAGTCATAGGACAACGTTCAGGAGTTGCTTCTCTTCTCTA
GTCTTTCCACCATTTTGGTCCCAGAGCTCAAACTCAGGTCATCAGACTTA
GGAGCAAGTGTCTTTACCCACTGAGCCATCTTGCCAGCCAAATGTCTTCT
TATTTAGCTAGCTACCTATAGGATAAGTTAGCCCATATGGAAGAATTCAA
ACAGCAAGATTCAAAGACAGCAGGTATGTAACAAAGCGATTCAAAATGGC
AGATACAGAAGACAAGGTTAGACTGAAAAAGGTAAGAGGTGGCATCTTAC
CTGAATTTCAGTTGATGATGAAATCGAAGCAGGAAGATAACAGGAAAGAG
AAAAATCAGGAGCCGAGATGGGGAGACAAAGAGCCTGAAGTGACTGATCT
AGAGCACAAGGTCAGCAACAGGACAGGGAAGAGAGGTCAGCTAAGCTGCA
AAAGGCCTTGAGTGCCATGTAAGAAGTATTACGCTGTATTATCAGGTTTA
CGCAGAGGACAGCACAATTACATCTATTTCAAACACAATCTGAAAGCATG
GTAGAAGATGTATCTAGACAAAGGAAATTAATTAAGTGGCAGCTGTTAAA
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_g01.b1 MSMg01no497_g01.b1 CHROMAT_FILE:
MSMg01no497_g01.b1 PHD_FILE: MSMg01no497_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:02 2005
         (706 letters)



>mm_chr2_38223815_38224920
          Length = 1106

 Score = 1319 bits (682), Expect = 0.0
 Identities = 697/702 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattcaactaattatcatttcttttttaaagaaatcgtgggggctcggggagaagggg 64
           |||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 ggaattcaactaaagataatttcttttttaaagaaatcgtgggggctcggggagaagggg 847

                                                                       
Query: 65  gtggcgagtcattagaaaaggttggtaagagtcgtttgtgaagggctgtggggctcgtgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 gtggcgagtcattagaaaaggttggtaagagtcgtttgtgaagggctgtggggctcgtgg 787

                                                                       
Query: 125 ccctccaggttgccaggcacagaagttaagactgacgtcacagtcggcagggtggggcta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ccctccaggttgccaggcacagaagttaagactgacgtcacagtcggcagggtggggcta 727

                                                                       
Query: 185 gtcaagtctgtgagggttgtaggcgtgctggaggggctgagcgaggcgttggacagctcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gtcaagtctgtgagggttgtaggcgtgctggaggggctgagcgaggcgttggacagctcc 667

                                                                       
Query: 245 gaggcgggccctgaaggcgtccctgtctgcagcgtggcatctgacgtcttgtccacgccc 304
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gaggcgggccctgacggcgtccctgtctgcagcgtggcatctgacgtcttgtccacgccc 607

                                                                       
Query: 305 gtgttttcctgccgtaaaaggttgcgcctgaacttggcccgggcattctgaaaccagacc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gtgttttcctgccgtaaaaggttgcgcctgaacttggcccgggcattctgaaaccagacc 547

                                                                       
Query: 365 tgtgtggaacgacaggggaggactggttatgggaaggcggagaccgacaagggaaagacc 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 546 tgtgtggaacgacaggggaggactggttatgggaaggcggagaccgacaagggaaacacc 487

                                                                       
Query: 425 gacaaagggaaagctgcagctcattgatgctcaactcagttcaacctggccttagcagga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gacaaagggaaagctgcagctcattgatgctcaactcagttcaacctggccttagcagga 427

                                                                       
Query: 485 ggtctagagagcccatgccacattctcttcacaaaagtaaaataaagttttagtttctct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ggtctagagagcccatgccacattctcttcacaaaagtaaaataaagttttagtttctct 367

                                                                       
Query: 545 ggtggctatgaccgggttaccttcctaccaggtcacttgccgtggtgctgagactgaggc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggtggctatgaccgggttaccttcctaccaggtcacttgccgtggtgctgagactgaggc 307

                                                                       
Query: 605 cttgaaaatgacactacattgaggccaatgtagaaaggacagcagagacttgaagatttt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cttgaaaatgacactacattgaggccaatgtagaaaggacagcagagacttgaagatttt 247

                                                     
Query: 665 gcaagaaagaaagaaagattgagatcatagtgagaaaaacat 706
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gcaagaaagaaagaaagattgagatcatagtgagaaaaacat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space:   762816
Effective search space used:   762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
Query= MSMg01no497_g01.g1 MSMg01no497_g01.g1 CHROMAT_FILE:
MSMg01no497_g01.g1 PHD_FILE: MSMg01no497_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:02 2005
         (648 letters)



>mm_chr2_38069053_38070100
          Length = 1048

 Score = 1237 bits (640), Expect = 0.0
 Identities = 646/648 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaaaatagaagtatctttaaatgtctctttttaaattagattattaactcaggatggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctaaaatagaagtatctttaaatgtctctttttaaattagattattaactcaggatggg 260

                                                                       
Query: 61  agacatactacggcatgggtgtagaagtcataggacaacgttcaggagttgcttctcttc 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggacatactacggcatgggtgtagaagtcataggacaacgttcaggagttgcttctcttc 320

                                                                       
Query: 121 tctagtctttccaccattttggtcccagagctcaaactcaggtcatcagacttaggagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctagtctttccaccattttggtcccagagctcaaactcaggtcatcagacttaggagca 380

                                                                       
Query: 181 agtgtctttacccactgagccatcttgccagccaaatgtcttcttatttagctagctacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgtctttacccactgagccatcttgccagccaaatgtcttcttatttagctagctacc 440

                                                                       
Query: 241 tataggataagttagcccatatggaagaattcaaacagcaagattcaaagacagcaggta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tataggataagttagcccatatggaagaattcaaacagcaagattcaaagacagcaggta 500

                                                                       
Query: 301 tgtaacaaagcgattcaaaatggcagatacagaagacaaggttagactgaaaaaggtaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtaacaaagcgattcaaaatggcagatacagaagacaaggttagactgaaaaaggtaag 560

                                                                       
Query: 361 aggtggcatcttacctgaatttcagttgatgatgaaatcgaagcaggaagataacaggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggtggcatcttacctgaatttcagttgatgatgaaatcgaagcaggaagataacaggaa 620

                                                                       
Query: 421 agagaaaaatcaggagccgagatggggagacaaagagcctgaagtgactgatctagagca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agagaaaaatcaggagccgagatggggagacaaagagcctgaagtgactgatctagagca 680

                                                                       
Query: 481 caaggtcagcaacaggacagggaagagaggtcagctaagctgcaaaaggccttgagtgcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caaggtcagcaacaggacagggaagagaggtcagctaagctgcaaaaggccttgagtgcc 740

                                                                       
Query: 541 atgtaagaagtattacgctgtattatcaggtttacgcagaggacagcacaattacatcta 600
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 741 atgtaagaagtattacgctgtattatcagggttacgcagaggacagcacaattacatcta 800

                                                           
Query: 601 tttcaaacacaatctgaaagcatggtagaagatgtatctagacaaagg 648
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttcaaacacaatctgaaagcatggtagaagatgtatctagacaaagg 848


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)