Query= MSMg01no497_o19.b1 MSMg01no497_o19.b1 CHROMAT_FILE:
MSMg01no497_o19.b1 PHD_FILE: MSMg01no497_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:46 2005
(677 letters)
>mm_chr2_159316331_159317406
Length = 1076
Score = 1276 bits (660), Expect = 0.0
Identities = 672/676 (99%), Gaps = 1/676 (0%)
Strand = Plus / Plus
Query: 1 attttatcccagaaatttggaaggtttaaaggagatactttaagatgataagcacttcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttatcccagaaatttggaaggtttaaaggagatactttaagatgataagcacttcaa 260
Query: 61 tgatatcatcaacagcatcctctgcatcatcatcagtaccagctatttgaatgtagttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatatcatcaacagcatcctctgcatcatcatcagtaccagctatttgaatgtagttcc 320
Query: 121 ttttactgtgaacctggccgcatgcaagaataataataggaacaaaaaataattcatggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttactgtgaacctggccgcatgcaagaataataataggaacaaaaaataattcatggt 380
Query: 181 ttctcaaaatcatgggtaacattgcccaggccaaaaaagcagtttatgaaaatggcccta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctcaaaatcatgggtaacattgcccaggccaaaaaagcagtttatgaaaatggcccta 440
Query: 241 acttcagtgttctcctgcgtcttctattcttctgctatgttaatgagatgtaataacctt 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttcagagttctcctgcgtcttctattcttctgctatgttaatgagatgtaataacctt 500
Query: 301 ttaaagaaaaccttttaacatattttctgtttatctcaaatatttccttcctttgtcctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaaagaaaaccttttaacatattttctgtttatctcaaatatttccttcctttgtcctc 560
Query: 361 aaggttgggcagtaattggaaaaaaaaaattctattttcctttccttcgccgatcccact 420
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 561 aaggttgggcagtaattggaaaaaaaaa-ttctattttcctttccttcgccaatcccact 619
Query: 421 caagttgagcaggccctggctccttgcccacccacctttattccagatgttaccctggcg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 caagttgagcaggccctggctccttgcccacccacctttattccagatgttaccctggcg 679
Query: 481 aacctctcaggctgtaaccaggcaaccattgggaagagggccctcctggctctgggccta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aacctctcaggctgtaaccaggcaaccattgggaagagggccctcctggctctgggccta 739
Query: 541 gaaacaaaagaaaaacaaataggaggatgtcttgagtcttctacctactttggttttcca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gaaacaaaagaaaaacaaataggaggatgtcttgagtcttctacctactttggttttcca 799
Query: 601 atctcacttccctcggacttttattattttttttgtaatggaaactagagcttggtacct 660
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 800 atctcacttccctcggacttttattattatttttgtaatggaaactagagcttggtacct 859
Query: 661 ggggctgtctgcacac 676
||||||||||||||||
Sbjct: 860 ggggctgtctgcacac 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1076
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1066
Effective search space: 711022
Effective search space used: 711022
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no497_o19.g1 MSMg01no497_o19.g1 CHROMAT_FILE:
MSMg01no497_o19.g1 PHD_FILE: MSMg01no497_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:46 2005
(647 letters)
>mm_chr2_159442301_159443347
Length = 1047
Score = 1158 bits (599), Expect = 0.0
Identities = 635/647 (98%)
Strand = Plus / Minus
Query: 1 tgcagcacatagtagggctccaagcattccattgcagcacatagggggctccgagcttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 847 tgcagcacatagtagggctccaagcattccattgcagcacatagggggctctgagcttgt 788
Query: 61 gtcagaagccatctgcttacagcacccaactcctgggaccctgactattcgagtttgtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 gtcagaagccatctgcttacagcacccaactcctgggaccctgactattcgagtttgtat 728
Query: 121 ttcttggatgaccacagtgacagacagctactgctggttattttcattgagggagaggca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ttcttggatgaccacagtgacagacagctactgctggttattttcattgagggagaggca 668
Query: 181 gggtttaaggggaaacatctgtgtaagaaactgttttctcccagtcattgctcaggtgtg 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 667 gggtttaaggggaaacatctgtgtaagaaactgttttctcccagccattgctcaggtgtg 608
Query: 241 tctaattggagagggcgagggaggagtgcagcaaaattaaatgaacaattaaaaagtttc 300
| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 acaaaagggagagggtgagggaggagtgcagcaaaattaaatgaacaattaaaaagtttc 548
Query: 301 cacacttttgacttcaattaacctctgaacctcctgcttcaatcttcgggcttataaaat 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 caaacttttgacttcaattaacctctgaacctcctgcttcaatcttcgggcttataaaat 488
Query: 361 gatggactcgggatgtaaaactggtttgggtgtttcccagtagcttgcctggctttcctg 420
|||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gatggactcgggctgtgagactggtttgggtgtttcccagtagcttgcctggctttcctg 428
Query: 421 atggggagaggacttactgattttatgactaagatgtcttgcaagaaaataagccagtga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 atggggagaggacttactgattttatgactaagatgtcttgcaagaaaataagccagtga 368
Query: 481 tgacagggaaacagcctggccttggtgggcgctgggatggaacactggaggcacagcaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgacagggaaacagcctggccttggtgggcgctgggatggaacactggaggcacagcaga 308
Query: 541 tgactcagccctagggacctttctcccccacttaacccctgccttgtcaccattacactt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tgactcagccctagggacctttctcccccacttaacccctgccttgtcaccattacactt 248
Query: 601 ttcagatctctcaccacttctcatttccagaagctaatggaaagtgg 647
||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 247 ttcagatctctcaccacttctcatttccagaggctaatggaaagtgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
