Query= MSMg01no498_i07.b1 MSMg01no498_i07.b1 CHROMAT_FILE:
MSMg01no498_i07.b1 PHD_FILE: MSMg01no498_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:35 2005
(283 letters)
>mm_chr2_91047971_91048653
Length = 683
Score = 540 bits (279), Expect = e-158
Identities = 282/283 (99%)
Strand = Plus / Plus
Query: 1 tcatgagcagcccttctcccttacagcatgacactaccctggttgctctgcaaatggcac 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatgagcagcccttctcccttacagcatgacactaccctggttgctctgcaaatggcat 260
Query: 61 tgaatgtctacaatgggaagcaagctccctatgcttcctgccacatatttgaactgtacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaatgtctacaatgggaagcaagctccctatgcttcctgccacatatttgaactgtacc 320
Query: 121 aggaagataatgggtaagtggggctaccaggtgtcttctaaagaggcactgggatggctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaagataatgggtaagtggggctaccaggtgtcttctaaagaggcactgggatggctg 380
Query: 181 agggaaacccagagactcagttatgggcatggtgagcatccctatcttgcttcctgtcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggaaacccagagactcagttatgggcatggtgagcatccctatcttgcttcctgtcaa 440
Query: 241 ctctcaggaatttctcagtcgagatgtactttcggaatgacag 283
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctcaggaatttctcagtcgagatgtactttcggaatgacag 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no498_i07.g1 MSMg01no498_i07.g1 CHROMAT_FILE:
MSMg01no498_i07.g1 PHD_FILE: MSMg01no498_i07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:35 2005
(522 letters)
>mm_chr2_91148373_91149294
Length = 922
Score = 603 bits (312), Expect = e-177
Identities = 367/410 (89%), Gaps = 39/410 (9%)
Strand = Plus / Minus
Query: 1 cagttctctcttgtgcacacagtctgaatttgtctgtctgcgaaatggggataaaaatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 cagttctctcttgtgcacacagtctgaatttgtctgtctgcgaaatggggataaaaatag 351
Query: 61 tgacaattaagcccgcaagatgactcagtgggaagctctgaaaacccggcagcccaggtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tgacaattaagcccgcaagatgactcagtgggaagctctgaaaacccggcagcccaggtt 291
Query: 121 caatcccagaaggtggaaggaaagaggtgacgccacaaaattgtcctggaaccttcaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 caatcccagaaggtggaaggaaagaggtgacgccacaaaattgtcctggaaccttcaaat 231
Query: 181 aagttctatggtgaacatgcacacacgcac--------------------agagagagag 220
|||||||||||||||||||||||||||||| ||||||||||
Sbjct: 230 aagttctatggtgaacatgcacacacgcacagagagagagagagagagagagagagagag 171
Query: 221 agagagagagagagagagagatatattagagagagagagagagagagagagagag----- 275
||||||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct: 170 agagagagagagagagagagagagaggagagagagagagagagagagagagagagagaga 111
Query: 276 --------------aaactgttaaaactgtgaagattagtcaggacacacaggcaagtca 321
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 agagagagagagaaaaactgttaaaactgtgaagattagtcaggacacacaggcaagtca 51
Query: 322 tttgcaggcagttctgggcaagcctgggctaaatgtgagactttgcttta 371
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 tttgcaggcagttctgggcaagcctgggctaaatgtgagactttgcttta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 109
Number of extensions: 41
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
