BAC Information

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BAC

Clone NameMSMg01-498I17
Chromosome2 (Build37)
Map Location 172,701,554 - 172,888,558
singlet/doubletdoublet
Overlap geneBmp7, LOC100043751, Spo11, Rae1, Rbm38
Upstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750
Downstream geneCtcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912, LOC664901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498I17.T7 (MSMg01no498_i17.b1)MSMg01-498I17.TJ (MSMg01no498_i17.g1)
ACCAG574844AG574845
length783760
length of high quality
(start - end)		577 (70 - 646)576 (79 - 654)
definitionCHROMAT_FILE: MSMg01no498_i17.b1 PHD_FILE: MSMg01no498_i17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:38 2005CHROMAT_FILE: MSMg01no498_i17.g1 PHD_FILE: MSMg01no498_i17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,701,554 - 172,702,128)(172,888,015 - 172,888,558)
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCACCTGCTTACCTCCAAGGTCAAGAAGAGCGAGCACAGGCCAGT
CTGTCTTTAGCACAGGAAGGTCAAGGGTCAAGACACCACCTTAGCACAGG
CCACAGAGCCTGGACAACTGGTCTACCTTCTTGAACAGCTATGGACTGGG
TATCTAAGGTGAACTCTGTGCCATAGCTGGAGGCTACAGCTAGCACCACC
TACCTGACAAACACTACTCCCCTCTTCCTGCAGGAGCAGAGTGGGCTGTG
GACTACCTCCTCAGGCCAGGGTGAATCAGCCTGAGCTAGAAACAGTTCTG
AGTAGGCTCACTGGGACCAGACTGCCCACAGCTCCCCATACTGAGTAAGG
GCGGATGCTGAAGCAAGACATGGGGGAAAGTGCAATGGTTATTAATGACG
TGAAGGGAACGGGTAAAATCTCACAGAAGGTCTTTGGTTTAGTGTTGGCA
GCCAGCTATGGTTGTGCTGCGGGGGATGGGTCCTTGCTTATCCTATCTGG
GGTTGTAGCCGCCCTGGGAGAAGGTTGTTGGAATGCCCCAGCGGGTCCTT
CTTAGCAGAAAAGCAAGGGAAGGGGATAAAGGAGACACCTAGCTCCCTTA
CCTAATCCTGTTCCATTCACCCCACCCAGCACAGCAGAAAGGCCCGTGAG
CAACAGGCAGTGCAGGCCACCAACCCCCTGAGCACTACCTCGGAAAGGCC
CCGTCCCGGGGCAGATGGCTCAACTCGCTTTCG

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTGAGAGCCCCATGACACCA
CTGCCCTGAGCATCCTGGTCCCAGACCCTCTCCTCTCATGCTATCCCAGC
AAGTGGGTACTTCAGACAAAGAGGAGACCGAGCCAGGCACGATGACTTAA
GCCTGGTATCCCAGAATTAGAGAGGAAGAGGCAAGAGACCCACCAGGAGC
TGGAGGCCAGCCTGGGCTATGTATGAAACAACCTTGATTCCATAGTTAGA
CCCTGTCTCAGGGAATGGGTGTGATGTTAAACCCGTGGAGGCTTCGAGGC
CCTTGGTGGCATCCACCAGTGTCTGAAACAGGGCTAAAAAGCCTTCTTTC
CTCGCATGGAGTCAACAGTACCACCTCAGTGCTCCCGTGCTCGGTCAGCA
CCGTGACACCAGATCAATGTTAAGGGCAGCCCTGGGCAAGCACACGGTCC
CAGGAGGCTTGCTGGAGAGGTTGGCAGACCCTCTTCCCAGAGACCAGGCG
CAGCCTGGGAATCTACTGGAACAAGCCTCCGAGCTCTGTCTACAGGACCC
GTAAGCGCTGCTTAGACAGACTTGTCTCTCAAAATGCCAAAGTAGCAAGT
ACCACAGGTGCCACTGGGGAGCAAATGAGGAAGGCAGGGCCTCAGAGCCA
ACCGCATTGAAAGAAAATCTGGGAGTAGACCGCCACAGTGTCCTTGTGAA
ACTGAGACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_i17.b1 MSMg01no498_i17.b1 CHROMAT_FILE:
MSMg01no498_i17.b1 PHD_FILE: MSMg01no498_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:38 2005
         (577 letters)



>mm_chr2_172701352_172702328
          Length = 977

 Score = 1019 bits (527), Expect = 0.0
 Identities = 563/575 (97%)
 Strand = Plus / Plus

                                                                       
Query: 3   aaggtcaagaagagcgagcacaggccagtctgtctttagcacaggaaggtcaagggtcaa 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 203 aaggtcaagaagagcgagcacaggccagtctgtctttagcacaggaaggtcaaggatcaa 262

                                                                       
Query: 63  gacaccaccttagcacaggccacagagcctggacaactggtctaccttcttgaacagcta 122
           ||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 263 gacaccaccctagcacagtccacagagcctggacaactggtctaccttctggaacagcta 322

                                                                       
Query: 123 tggactgggtatctaaggtgaactctgtgccatagctggaggctacagctagcaccacct 182
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tggactggatatctaaggtgaactctgtgccatagctggaggctacagctagcaccacct 382

                                                                       
Query: 183 acctgacaaacactactcccctcttcctgcaggagcagagtgggctgtggactacctcct 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 acctgacaaacactactcccctcttcctgcaggagcagagtgggctgtggactacctcct 442

                                                                       
Query: 243 caggccagggtgaatcagcctgagctagaaacagttctgagtaggctcactgggaccaga 302
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 caggccagggtgaagcagcctgagctagaaacagttctgagtaggctcactgggaccaga 502

                                                                       
Query: 303 ctgcccacagctccccatactgagtaagggcggatgctgaagcaagacatgggggaaagt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctgcccacagctccccatactgagtaagggcggatgctgaagcaagacatgggggaaagt 562

                                                                       
Query: 363 gcaatggttattaatgacgtgaagggaacgggtaaaatctcacagaaggtctttggttta 422
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gcaatggttattaataacgtgaagggaacgggtaaaatctcacagaaggtctttggttta 622

                                                                       
Query: 423 gtgttggcagccagctatggttgtgctgcgggggatgggtccttgcttatcctatctggg 482
           ||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||
Sbjct: 623 gtgttggcagccagctatgggcgtgctgcaggggatgggtccttgcttatcctatctggg 682

                                                                       
Query: 483 gttgtagccgccctgggagaaggttgttggaatgccccagcgggtccttcttagcagaaa 542
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 683 gttgtagccgccctgggagaaggttgttggaatgccccagtgggtccttcttagcagaaa 742

                                              
Query: 543 agcaagggaaggggataaaggagacacctagctcc 577
           ||||||||||||||||||||||||||| |||||||
Sbjct: 743 agcaagggaaggggataaaggagacacatagctcc 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no498_i17.g1 MSMg01no498_i17.g1 CHROMAT_FILE:
MSMg01no498_i17.g1 PHD_FILE: MSMg01no498_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:38 2005
         (576 letters)



>mm_chr2_172887583_172888558
          Length = 976

 Score = 1006 bits (520), Expect = 0.0
 Identities = 538/544 (98%)
 Strand = Plus / Minus

                                                                       
Query: 33  catcctggtcccagaccctctcctctcatgctatcccagcaagtgggtacttcagacaaa 92
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 976 catcctggtcccagaccctctcctctcatgctatcccagcaagtgggaacttcagacaaa 917

                                                                       
Query: 93  gaggagaccgagccaggcacgatgacttaagcctggtatcccagaattagagaggaagag 152
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 916 gaggagaccgagccaggcacgatgacttaagcctgggatcccagaattagagaggaagag 857

                                                                       
Query: 153 gcaagagacccaccaggagctggaggccagcctgggctatgtatgaaacaaccttgattc 212
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 gcaagagacccaccaggagctggaggccagcctgggctatgtatgaaacaaccttgattc 797

                                                                       
Query: 213 catagttagaccctgtctcagggaatgggtgtgatgttaaacccgtggaggcttcgaggc 272
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 796 catagttagaccctgtctcagggaatgggtgtgaggttaaacccgtggaggcttcgaggc 737

                                                                       
Query: 273 ccttggtggcatccaccagtgtctgaaacagggctaaaaagccttctttcctcgcatgga 332
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ccttggtggcatccaccagtgtctgaaacagggctaaaaagccttctttcctcgcatgga 677

                                                                       
Query: 333 gtcaacagtaccacctcagtgctcccgtgctcggtcagcaccgtgacaccagatcaatgt 392
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gtcaacagtaccacctcagtgctcccgtgctcggtcagcaccgtgacaccagatcaatgt 617

                                                                       
Query: 393 taagggcagccctgggcaagcacacggtcccaggaggcttgctggagaggttggcagacc 452
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 taagggcggccctgggcaagcacacggtcccaggaggcttgctggagaggttggcagacc 557

                                                                       
Query: 453 ctcttcccagagaccaggcgcagcctgggaatctactggaacaagcctccgagctctgtc 512
           |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 556 ctcttcccagagaccaggcgcagcctgggaatctgccggaacaagcctccgagctctgtc 497

                                                                       
Query: 513 tacaggacccgtaagcgctgcttagacagacttgtctctcaaaatgccaaagtagcaagt 572
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tacaggacccgtaagcgctgcttagacagacttgtctctcaaaatgccaaagtagcaagt 437

               
Query: 573 acca 576
           ||||
Sbjct: 436 acca 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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